SMTL ID : 6e6e.4 (7 other biounits)

DGY-06-116, a novel and selective covalent inhibitor of SRC kinase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

1 x HVY: N-(2-chloro-6-methylphenyl)-2-{[4-(4-methylpiperazin-1-yl)phenyl]amino}-4-{[2-(propanoylamino)phenyl]amino}pyrimidine-5-carboxamide(Covalent)

HVY.1: 22 residues within 4Å: Chain A: L.16, Q.18, G.19, C.20, V.24, A.36, I.37, K.38, E.53, M.57, V.66, I.79, T.81, E.82, Y.83, M.84, S.85, G.87, N.134, L.136, A.146, D.147 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:L.16, A:V.24, A:V.24, A:A.36, A:I.79, A:T.81, A:Y.83, A:L.136, A:A.146, A:D.147 Hydrogen bonds: A:C.20, A:T.81, A:T.81, A:M.84, A:M.84 pi-Cation interactions: A:K.38

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gurbani, D. et al., Structure and Characterization of a Covalent Inhibitor of Src Kinase. Front Mol Biosci (2020)

Release Date

2019-07-31

Peptides

Proto-oncogene tyrosine-protein kinase Src: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Proto-oncogene tyrosine-protein kinase Src

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