SMTL ID : 6e6e.7 (7 other biounits)

DGY-06-116, a novel and selective covalent inhibitor of SRC kinase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

1 x HVY: N-(2-chloro-6-methylphenyl)-2-{[4-(4-methylpiperazin-1-yl)phenyl]amino}-4-{[2-(propanoylamino)phenyl]amino}pyrimidine-5-carboxamide(Covalent)

HVY.1: 19 residues within 4Å: Chain A: L.16, G.19, C.20, V.24, A.36, I.37, K.38, E.53, M.57, V.66, I.79, T.81, Y.83, M.84, S.85, G.87, L.136, A.146, D.147 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:L.16, A:L.16, A:V.24, A:V.24, A:K.38, A:V.66, A:I.79, A:T.81, A:Y.83 Hydrogen bonds: A:C.20, A:T.81, A:T.81, A:M.84, A:M.84 Water bridges: A:K.38 pi-Cation interactions: A:K.38 Halogen bonds: A:A.36

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gurbani, D. et al., Structure and Characterization of a Covalent Inhibitor of Src Kinase. Front Mol Biosci (2020)

Release Date

2019-07-31

Peptides

Proto-oncogene tyrosine-protein kinase Src: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

Proto-oncogene tyrosine-protein kinase Src

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