SMTL ID : 6ef8.1

Cryo-EM of the OmcS nanowires from Geobacter sulfurreducens

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-heptamer

Ligands

42 x HEC: HEME C(Non-covalent)(Covalent)

HEC.1: 26 residues within 4Å: Chain A: R.107, P.129, S.236, H.243, I.246, H.247, H.257, A.259, N.327, C.328, S.330, C.331, H.332, S.341, L.347 Chain B: E.10, T.14, M.15, H.16, S.18, L.19, G.20, G.21, M.24 Ligands: HEC.2, HEC.6 16 PLIP interactions: 7 interactions with chain A, 9 interactions with chain B, Hydrophobic interactions: A:P.129, A:H.243, A:I.246, A:H.247, A:A.259, A:L.347, B:E.10 Metal complexes: A:H.332, B:H.16 Hydrogen bonds: B:E.10, B:M.15, B:H.16, B:S.18, B:G.20, B:G.21 Salt bridges: B:H.16 HEC.2: 28 residues within 4Å: Chain A: E.106, R.107, G.109, H.110, N.111, D.122, L.125, T.127, A.128, Y.133, P.134, A.135, L.138, S.142, C.143, F.205, M.235, W.238, C.239, C.242, H.243, C.328, L.329, H.332, S.341, M.342 Ligands: HEC.1, HEC.4 17 PLIP interactions: 17 interactions with chain A, Hydrophobic interactions: A:D.122, A:L.125, A:L.125, A:A.128, A:Y.133, A:A.135, A:L.138, A:F.205, A:W.238, A:W.238, A:H.332, A:M.342 Hydrogen bonds: A:N.111, A:N.111 Salt bridges: A:R.107 Metal complexes: A:H.110, A:H.243 HEC.3: 21 residues within 4Å: Chain A: F.1, H.2, S.3, G.11, C.12, S.46, C.47, N.49, C.50, H.51, Y.62, C.140, H.144, P.146, S.168, S.170, Y.171, R.187, I.188 Ligands: HEC.4, HEC.5 21 PLIP interactions: 21 interactions with chain A, Hydrophobic interactions: A:F.1, A:F.1, A:Y.62, A:Y.62, A:H.144, A:P.146, A:I.188 Hydrogen bonds: A:F.1, A:F.1, A:H.2, A:S.3, A:S.168, A:S.170, A:Y.171, A:R.187 Salt bridges: A:R.187 pi-Stacking: A:F.1, A:H.2, A:H.51 Metal complexes: A:H.2, A:H.51 HEC.4: 27 residues within 4Å: Chain A: C.47, L.48, H.51, Y.62, I.64, T.81, P.82, G.83, F.86, H.110, I.112, L.138, H.139, C.140, C.143, H.144, Y.186, R.187, L.189, Y.218, Y.231, M.235, W.238, A.334, H.335 Ligands: HEC.2, HEC.3 18 PLIP interactions: 18 interactions with chain A, Hydrophobic interactions: A:L.48, A:H.51, A:I.64, A:I.64, A:I.112, A:I.112, A:L.138, A:L.189, A:L.189, A:Y.218, A:W.238 Hydrogen bonds: A:T.81, A:P.82, A:G.83, A:Y.186 Salt bridges: A:R.187 Metal complexes: A:H.144, A:H.335 HEC.5: 23 residues within 4Å: Chain A: F.1, H.2, V.6, A.7, E.8, C.9, C.12, H.13, M.36, L.38, Q.43, S.141, P.146, H.147, P.196, K.197, S.198 Chain C: C.400, N.401, H.404, K.406 Ligands: HEC.3, HEC.18 22 PLIP interactions: 17 interactions with chain A, 5 interactions with chain C, Hydrophobic interactions: A:F.1, A:V.6, A:A.7, A:L.38, A:Q.43, A:P.146, A:K.197, C:N.401, C:K.406, C:K.406 Hydrogen bonds: A:Q.43, A:K.197, A:S.198 Salt bridges: A:H.147, C:K.406 pi-Stacking: A:H.13, A:H.13, A:H.147, A:H.147 Metal complexes: A:H.13, A:H.147 pi-Cation interactions: C:K.406 HEC.6: 20 residues within 4Å: Chain A: Y.251, H.257, K.264, F.265, I.269, A.294, P.295, V.326, C.400, C.403, H.404 Chain B: C.9, E.10, H.13, M.15, M.36, L.37, K.197 Ligands: HEC.1, HEC.11 17 PLIP interactions: 3 interactions with chain B, 14 interactions with chain A, Hydrophobic interactions: B:L.37, A:Y.251, A:F.265, A:F.265, A:F.265, A:I.269, A:I.269, A:A.294, A:V.326 Salt bridges: B:K.197, B:K.197 Hydrogen bonds: A:Y.251, A:Y.251 pi-Stacking: A:H.257, A:H.404 Metal complexes: A:H.257, A:H.404 HEC.7: 26 residues within 4Å: Chain B: R.107, P.129, S.236, H.243, I.246, H.247, H.257, A.259, N.327, C.328, S.330, C.331, H.332, S.341, L.347 Chain D: E.10, T.14, M.15, H.16, S.18, L.19, G.20, G.21, M.24 Ligands: HEC.8, HEC.12 16 PLIP interactions: 7 interactions with chain B, 9 interactions with chain D, Hydrophobic interactions: B:P.129, B:H.243, B:I.246, B:H.247, B:A.259, B:L.347, D:E.10 Metal complexes: B:H.332, D:H.16 Hydrogen bonds: D:E.10, D:M.15, D:H.16, D:S.18, D:G.20, D:G.21 Salt bridges: D:H.16 HEC.8: 28 residues within 4Å: Chain B: E.106, R.107, G.109, H.110, N.111, D.122, L.125, T.127, A.128, Y.133, P.134, A.135, L.138, S.142, C.143, F.205, M.235, W.238, C.239, C.242, H.243, C.328, L.329, H.332, S.341, M.342 Ligands: HEC.7, HEC.10 17 PLIP interactions: 17 interactions with chain B, Hydrophobic interactions: B:D.122, B:L.125, B:L.125, B:A.128, B:Y.133, B:A.135, B:L.138, B:F.205, B:W.238, B:W.238, B:H.332, B:M.342 Hydrogen bonds: B:N.111, B:N.111 Salt bridges: B:R.107 Metal complexes: B:H.110, B:H.243 HEC.9: 21 residues within 4Å: Chain B: F.1, H.2, S.3, G.11, C.12, S.46, C.47, N.49, C.50, H.51, Y.62, C.140, H.144, P.146, S.168, S.170, Y.171, R.187, I.188 Ligands: HEC.10, HEC.11 21 PLIP interactions: 21 interactions with chain B, Hydrophobic interactions: B:F.1, B:F.1, B:Y.62, B:Y.62, B:H.144, B:P.146, B:I.188 Hydrogen bonds: B:F.1, B:F.1, B:H.2, B:S.3, B:S.168, B:S.170, B:Y.171, B:R.187 Salt bridges: B:R.187 pi-Stacking: B:F.1, B:H.2, B:H.51 Metal complexes: B:H.2, B:H.51 HEC.10: 27 residues within 4Å: Chain B: C.47, L.48, H.51, Y.62, I.64, T.81, P.82, G.83, F.86, H.110, I.112, L.138, H.139, C.140, C.143, H.144, Y.186, R.187, L.189, Y.218, Y.231, M.235, W.238, A.334, H.335 Ligands: HEC.8, HEC.9 18 PLIP interactions: 18 interactions with chain B, Hydrophobic interactions: B:L.48, B:H.51, B:I.64, B:I.64, B:I.112, B:I.112, B:L.138, B:L.189, B:L.189, B:Y.218, B:W.238 Hydrogen bonds: B:T.81, B:P.82, B:G.83, B:Y.186 Salt bridges: B:R.187 Metal complexes: B:H.144, B:H.335 HEC.11: 24 residues within 4Å: Chain A: A.398, C.400, N.401, H.404, K.406 Chain B: F.1, H.2, V.6, A.7, E.8, C.9, C.12, H.13, M.36, L.38, Q.43, S.141, P.146, H.147, P.196, K.197, S.198 Ligands: HEC.6, HEC.9 21 PLIP interactions: 17 interactions with chain B, 4 interactions with chain A, Hydrophobic interactions: B:F.1, B:V.6, B:A.7, B:L.38, B:Q.43, B:P.146, B:K.197, A:K.406, A:K.406 Hydrogen bonds: B:Q.43, B:K.197, B:S.198 Salt bridges: B:H.147, A:K.406 pi-Stacking: B:H.13, B:H.13, B:H.147, B:H.147 Metal complexes: B:H.13, B:H.147 pi-Cation interactions: A:K.406 HEC.12: 19 residues within 4Å: Chain B: Y.251, H.257, K.264, F.265, I.269, A.294, P.295, V.326, C.400, C.403, H.404 Chain D: C.9, H.13, M.15, M.36, L.37, K.197 Ligands: HEC.7, HEC.23 17 PLIP interactions: 3 interactions with chain D, 14 interactions with chain B, Hydrophobic interactions: D:L.37, B:Y.251, B:F.265, B:F.265, B:F.265, B:I.269, B:I.269, B:A.294, B:V.326 Salt bridges: D:K.197, D:K.197 Hydrogen bonds: B:Y.251, B:Y.251 pi-Stacking: B:H.257, B:H.404 Metal complexes: B:H.257, B:H.404 HEC.13: 26 residues within 4Å: Chain A: E.10, T.14, M.15, H.16, S.18, L.19, G.20, G.21, M.24 Chain C: R.107, P.129, S.236, H.243, I.246, H.247, H.257, A.259, N.327, C.328, S.330, C.331, H.332, S.341, L.347 Ligands: HEC.14, HEC.18 16 PLIP interactions: 7 interactions with chain C, 9 interactions with chain A, Hydrophobic interactions: C:P.129, C:H.243, C:I.246, C:H.247, C:A.259, C:L.347, A:E.10 Metal complexes: C:H.332, A:H.16 Hydrogen bonds: A:E.10, A:M.15, A:H.16, A:S.18, A:G.20, A:G.21 Salt bridges: A:H.16 HEC.14: 28 residues within 4Å: Chain C: E.106, R.107, G.109, H.110, N.111, D.122, L.125, T.127, A.128, Y.133, P.134, A.135, L.138, S.142, C.143, F.205, M.235, W.238, C.239, C.242, H.243, C.328, L.329, H.332, S.341, M.342 Ligands: HEC.13, HEC.16 17 PLIP interactions: 17 interactions with chain C, Hydrophobic interactions: C:D.122, C:L.125, C:L.125, C:A.128, C:Y.133, C:A.135, C:L.138, C:F.205, C:W.238, C:W.238, C:H.332, C:M.342 Hydrogen bonds: C:N.111, C:N.111 Salt bridges: C:R.107 Metal complexes: C:H.110, C:H.243 HEC.15: 21 residues within 4Å: Chain C: F.1, H.2, S.3, G.11, C.12, S.46, C.47, N.49, C.50, H.51, Y.62, C.140, H.144, P.146, S.168, S.170, Y.171, R.187, I.188 Ligands: HEC.16, HEC.17 21 PLIP interactions: 21 interactions with chain C, Hydrophobic interactions: C:F.1, C:F.1, C:Y.62, C:Y.62, C:H.144, C:P.146, C:I.188 Hydrogen bonds: C:F.1, C:F.1, C:H.2, C:S.3, C:S.168, C:S.170, C:Y.171, C:R.187 Salt bridges: C:R.187 pi-Stacking: C:F.1, C:H.2, C:H.51 Metal complexes: C:H.2, C:H.51 HEC.16: 27 residues within 4Å: Chain C: C.47, L.48, H.51, Y.62, I.64, T.81, P.82, G.83, F.86, H.110, I.112, L.138, H.139, C.140, C.143, H.144, Y.186, R.187, L.189, Y.218, Y.231, M.235, W.238, A.334, H.335 Ligands: HEC.14, HEC.15 18 PLIP interactions: 18 interactions with chain C, Hydrophobic interactions: C:L.48, C:H.51, C:I.64, C:I.64, C:I.112, C:I.112, C:L.138, C:L.189, C:L.189, C:Y.218, C:W.238 Hydrogen bonds: C:T.81, C:P.82, C:G.83, C:Y.186 Salt bridges: C:R.187 Metal complexes: C:H.144, C:H.335 HEC.17: 23 residues within 4Å: Chain C: F.1, H.2, V.6, A.7, E.8, C.9, C.12, H.13, M.36, L.38, Q.43, S.141, P.146, H.147, P.196, K.197, S.198 Chain E: C.400, N.401, H.404, K.406 Ligands: HEC.15, HEC.30 22 PLIP interactions: 17 interactions with chain C, 5 interactions with chain E, Hydrophobic interactions: C:F.1, C:V.6, C:A.7, C:L.38, C:Q.43, C:P.146, C:K.197, E:N.401, E:K.406, E:K.406 Hydrogen bonds: C:Q.43, C:K.197, C:S.198 Salt bridges: C:H.147, E:K.406 pi-Stacking: C:H.13, C:H.13, C:H.147, C:H.147 Metal complexes: C:H.13, C:H.147 pi-Cation interactions: E:K.406 HEC.18: 20 residues within 4Å: Chain A: C.9, E.10, H.13, M.15, M.36, L.37, K.197 Chain C: Y.251, H.257, K.264, F.265, I.269, A.294, P.295, V.326, C.400, C.403, H.404 Ligands: HEC.5, HEC.13 17 PLIP interactions: 3 interactions with chain A, 14 interactions with chain C, Hydrophobic interactions: A:L.37, C:Y.251, C:F.265, C:F.265, C:F.265, C:I.269, C:I.269, C:A.294, C:V.326 Salt bridges: A:K.197, A:K.197 Hydrogen bonds: C:Y.251, C:Y.251 pi-Stacking: C:H.257, C:H.404 Metal complexes: C:H.257, C:H.404 HEC.19: 26 residues within 4Å: Chain D: R.107, P.129, S.236, H.243, I.246, H.247, H.257, A.259, N.327, C.328, S.330, C.331, H.332, S.341, L.347 Chain F: E.10, T.14, M.15, H.16, S.18, L.19, G.20, G.21, M.24 Ligands: HEC.20, HEC.24 16 PLIP interactions: 7 interactions with chain D, 9 interactions with chain F, Hydrophobic interactions: D:P.129, D:H.243, D:I.246, D:H.247, D:A.259, D:L.347, F:E.10 Metal complexes: D:H.332, F:H.16 Hydrogen bonds: F:E.10, F:M.15, F:H.16, F:S.18, F:G.20, F:G.21 Salt bridges: F:H.16 HEC.20: 28 residues within 4Å: Chain D: E.106, R.107, G.109, H.110, N.111, D.122, L.125, T.127, A.128, Y.133, P.134, A.135, L.138, S.142, C.143, F.205, M.235, W.238, C.239, C.242, H.243, C.328, L.329, H.332, S.341, M.342 Ligands: HEC.19, HEC.22 17 PLIP interactions: 17 interactions with chain D, Hydrophobic interactions: D:D.122, D:L.125, D:L.125, D:A.128, D:Y.133, D:A.135, D:L.138, D:F.205, D:W.238, D:W.238, D:H.332, D:M.342 Hydrogen bonds: D:N.111, D:N.111 Salt bridges: D:R.107 Metal complexes: D:H.110, D:H.243 HEC.21: 21 residues within 4Å: Chain D: F.1, H.2, S.3, G.11, C.12, S.46, C.47, N.49, C.50, H.51, Y.62, C.140, H.144, P.146, S.168, S.170, Y.171, R.187, I.188 Ligands: HEC.22, HEC.23 21 PLIP interactions: 21 interactions with chain D, Hydrophobic interactions: D:F.1, D:F.1, D:Y.62, D:Y.62, D:H.144, D:P.146, D:I.188 Hydrogen bonds: D:F.1, D:F.1, D:H.2, D:S.3, D:S.168, D:S.170, D:Y.171, D:R.187 Salt bridges: D:R.187 pi-Stacking: D:F.1, D:H.2, D:H.51 Metal complexes: D:H.2, D:H.51 HEC.22: 27 residues within 4Å: Chain D: C.47, L.48, H.51, Y.62, I.64, T.81, P.82, G.83, F.86, H.110, I.112, L.138, H.139, C.140, C.143, H.144, Y.186, R.187, L.189, Y.218, Y.231, M.235, W.238, A.334, H.335 Ligands: HEC.20, HEC.21 18 PLIP interactions: 18 interactions with chain D, Hydrophobic interactions: D:L.48, D:H.51, D:I.64, D:I.64, D:I.112, D:I.112, D:L.138, D:L.189, D:L.189, D:Y.218, D:W.238 Hydrogen bonds: D:T.81, D:P.82, D:G.83, D:Y.186 Salt bridges: D:R.187 Metal complexes: D:H.144, D:H.335 HEC.23: 23 residues within 4Å: Chain B: C.400, N.401, H.404, K.406 Chain D: F.1, H.2, V.6, A.7, E.8, C.9, C.12, H.13, M.36, L.38, Q.43, S.141, P.146, H.147, P.196, K.197, S.198 Ligands: HEC.12, HEC.21 22 PLIP interactions: 5 interactions with chain B, 17 interactions with chain D, Hydrophobic interactions: B:N.401, B:K.406, B:K.406, D:F.1, D:V.6, D:A.7, D:L.38, D:Q.43, D:P.146, D:K.197 Salt bridges: B:K.406, D:H.147 pi-Cation interactions: B:K.406 Hydrogen bonds: D:Q.43, D:K.197, D:S.198 pi-Stacking: D:H.13, D:H.13, D:H.147, D:H.147 Metal complexes: D:H.13, D:H.147 HEC.24: 20 residues within 4Å: Chain D: Y.251, H.257, K.264, F.265, I.269, A.294, P.295, V.326, C.400, C.403, H.404 Chain F: C.9, E.10, H.13, M.15, M.36, L.37, K.197 Ligands: HEC.19, HEC.35 17 PLIP interactions: 14 interactions with chain D, 3 interactions with chain F, Hydrophobic interactions: D:Y.251, D:F.265, D:F.265, D:F.265, D:I.269, D:I.269, D:A.294, D:V.326, F:L.37 Hydrogen bonds: D:Y.251, D:Y.251 pi-Stacking: D:H.257, D:H.404 Metal complexes: D:H.257, D:H.404 Salt bridges: F:K.197, F:K.197 HEC.25: 26 residues within 4Å: Chain C: E.10, T.14, M.15, H.16, S.18, L.19, G.20, G.21, M.24 Chain E: R.107, P.129, S.236, H.243, I.246, H.247, H.257, A.259, N.327, C.328, S.330, C.331, H.332, S.341, L.347 Ligands: HEC.26, HEC.30 16 PLIP interactions: 9 interactions with chain C, 7 interactions with chain E, Hydrophobic interactions: C:E.10, E:P.129, E:H.243, E:I.246, E:H.247, E:A.259, E:L.347 Hydrogen bonds: C:E.10, C:M.15, C:H.16, C:S.18, C:G.20, C:G.21 Salt bridges: C:H.16 Metal complexes: C:H.16, E:H.332 HEC.26: 28 residues within 4Å: Chain E: E.106, R.107, G.109, H.110, N.111, D.122, L.125, T.127, A.128, Y.133, P.134, A.135, L.138, S.142, C.143, F.205, M.235, W.238, C.239, C.242, H.243, C.328, L.329, H.332, S.341, M.342 Ligands: HEC.25, HEC.28 17 PLIP interactions: 17 interactions with chain E, Hydrophobic interactions: E:D.122, E:L.125, E:L.125, E:A.128, E:Y.133, E:A.135, E:L.138, E:F.205, E:W.238, E:W.238, E:H.332, E:M.342 Hydrogen bonds: E:N.111, E:N.111 Salt bridges: E:R.107 Metal complexes: E:H.110, E:H.243 HEC.27: 21 residues within 4Å: Chain E: F.1, H.2, S.3, G.11, C.12, S.46, C.47, N.49, C.50, H.51, Y.62, C.140, H.144, P.146, S.168, S.170, Y.171, R.187, I.188 Ligands: HEC.28, HEC.29 21 PLIP interactions: 21 interactions with chain E, Hydrophobic interactions: E:F.1, E:F.1, E:Y.62, E:Y.62, E:H.144, E:P.146, E:I.188 Hydrogen bonds: E:F.1, E:F.1, E:H.2, E:S.3, E:S.168, E:S.170, E:Y.171, E:R.187 Salt bridges: E:R.187 pi-Stacking: E:F.1, E:H.2, E:H.51 Metal complexes: E:H.2, E:H.51 HEC.28: 27 residues within 4Å: Chain E: C.47, L.48, H.51, Y.62, I.64, T.81, P.82, G.83, F.86, H.110, I.112, L.138, H.139, C.140, C.143, H.144, Y.186, R.187, L.189, Y.218, Y.231, M.235, W.238, A.334, H.335 Ligands: HEC.26, HEC.27 18 PLIP interactions: 18 interactions with chain E, Hydrophobic interactions: E:L.48, E:H.51, E:I.64, E:I.64, E:I.112, E:I.112, E:L.138, E:L.189, E:L.189, E:Y.218, E:W.238 Hydrogen bonds: E:T.81, E:P.82, E:G.83, E:Y.186 Salt bridges: E:R.187 Metal complexes: E:H.144, E:H.335 HEC.29: 23 residues within 4Å: Chain E: F.1, H.2, V.6, A.7, E.8, C.9, C.12, H.13, M.36, L.38, Q.43, S.141, P.146, H.147, P.196, K.197, S.198 Chain G: C.400, N.401, H.404, K.406 Ligands: HEC.27, HEC.42 22 PLIP interactions: 17 interactions with chain E, 5 interactions with chain G, Hydrophobic interactions: E:F.1, E:V.6, E:A.7, E:L.38, E:Q.43, E:P.146, E:K.197, G:N.401, G:K.406, G:K.406 Hydrogen bonds: E:Q.43, E:K.197, E:S.198 Salt bridges: E:H.147, G:K.406 pi-Stacking: E:H.13, E:H.13, E:H.147, E:H.147 Metal complexes: E:H.13, E:H.147 pi-Cation interactions: G:K.406 HEC.30: 20 residues within 4Å: Chain C: C.9, E.10, H.13, M.15, M.36, L.37, K.197 Chain E: Y.251, H.257, K.264, F.265, I.269, A.294, P.295, V.326, C.400, C.403, H.404 Ligands: HEC.17, HEC.25 17 PLIP interactions: 3 interactions with chain C, 14 interactions with chain E, Hydrophobic interactions: C:L.37, E:Y.251, E:F.265, E:F.265, E:F.265, E:I.269, E:I.269, E:A.294, E:V.326 Salt bridges: C:K.197, C:K.197 Hydrogen bonds: E:Y.251, E:Y.251 pi-Stacking: E:H.257, E:H.404 Metal complexes: E:H.257, E:H.404 HEC.31: 17 residues within 4Å: Chain F: R.107, P.129, S.236, H.243, I.246, H.247, H.257, A.259, N.327, C.328, S.330, C.331, H.332, S.341, L.347 Ligands: HEC.32, HEC.36 7 PLIP interactions: 7 interactions with chain F, Hydrophobic interactions: F:P.129, F:H.243, F:I.246, F:H.247, F:A.259, F:L.347 Metal complexes: F:H.332 HEC.32: 28 residues within 4Å: Chain F: E.106, R.107, G.109, H.110, N.111, D.122, L.125, T.127, A.128, Y.133, P.134, A.135, L.138, S.142, C.143, F.205, M.235, W.238, C.239, C.242, H.243, C.328, L.329, H.332, S.341, M.342 Ligands: HEC.31, HEC.34 17 PLIP interactions: 17 interactions with chain F, Hydrophobic interactions: F:D.122, F:L.125, F:L.125, F:A.128, F:Y.133, F:A.135, F:L.138, F:F.205, F:W.238, F:W.238, F:H.332, F:M.342 Hydrogen bonds: F:N.111, F:N.111 Salt bridges: F:R.107 Metal complexes: F:H.110, F:H.243 HEC.33: 21 residues within 4Å: Chain F: F.1, H.2, S.3, G.11, C.12, S.46, C.47, N.49, C.50, H.51, Y.62, C.140, H.144, P.146, S.168, S.170, Y.171, R.187, I.188 Ligands: HEC.34, HEC.35 21 PLIP interactions: 21 interactions with chain F, Hydrophobic interactions: F:F.1, F:F.1, F:Y.62, F:Y.62, F:H.144, F:P.146, F:I.188 Hydrogen bonds: F:F.1, F:F.1, F:H.2, F:S.3, F:S.168, F:S.170, F:Y.171, F:R.187 Salt bridges: F:R.187 pi-Stacking: F:F.1, F:H.2, F:H.51 Metal complexes: F:H.2, F:H.51 HEC.34: 27 residues within 4Å: Chain F: C.47, L.48, H.51, Y.62, I.64, T.81, P.82, G.83, F.86, H.110, I.112, L.138, H.139, C.140, C.143, H.144, Y.186, R.187, L.189, Y.218, Y.231, M.235, W.238, A.334, H.335 Ligands: HEC.32, HEC.33 18 PLIP interactions: 18 interactions with chain F, Hydrophobic interactions: F:L.48, F:H.51, F:I.64, F:I.64, F:I.112, F:I.112, F:L.138, F:L.189, F:L.189, F:Y.218, F:W.238 Hydrogen bonds: F:T.81, F:P.82, F:G.83, F:Y.186 Salt bridges: F:R.187 Metal complexes: F:H.144, F:H.335 HEC.35: 23 residues within 4Å: Chain D: C.400, N.401, H.404, K.406 Chain F: F.1, H.2, V.6, A.7, E.8, C.9, C.12, H.13, M.36, L.38, Q.43, S.141, P.146, H.147, P.196, K.197, S.198 Ligands: HEC.24, HEC.33 22 PLIP interactions: 17 interactions with chain F, 5 interactions with chain D, Hydrophobic interactions: F:F.1, F:V.6, F:A.7, F:L.38, F:Q.43, F:P.146, F:K.197, D:N.401, D:K.406, D:K.406 Hydrogen bonds: F:Q.43, F:K.197, F:S.198 Salt bridges: F:H.147, D:K.406 pi-Stacking: F:H.13, F:H.13, F:H.147, F:H.147 Metal complexes: F:H.13, F:H.147 pi-Cation interactions: D:K.406 HEC.36: 12 residues within 4Å: Chain F: Y.251, H.257, K.264, F.265, I.269, A.294, P.295, V.326, C.400, C.403, H.404 Ligands: HEC.31 14 PLIP interactions: 14 interactions with chain F, Hydrophobic interactions: F:Y.251, F:F.265, F:F.265, F:F.265, F:I.269, F:I.269, F:A.294, F:V.326 Hydrogen bonds: F:Y.251, F:Y.251 pi-Stacking: F:H.257, F:H.404 Metal complexes: F:H.257, F:H.404 HEC.37: 26 residues within 4Å: Chain E: E.10, T.14, M.15, H.16, S.18, L.19, G.20, G.21, M.24 Chain G: R.107, P.129, S.236, H.243, I.246, H.247, H.257, A.259, N.327, C.328, S.330, C.331, H.332, S.341, L.347 Ligands: HEC.38, HEC.42 16 PLIP interactions: 7 interactions with chain G, 9 interactions with chain E, Hydrophobic interactions: G:P.129, G:H.243, G:I.246, G:H.247, G:A.259, G:L.347, E:E.10 Metal complexes: G:H.332, E:H.16 Hydrogen bonds: E:E.10, E:M.15, E:H.16, E:S.18, E:G.20, E:G.21 Salt bridges: E:H.16 HEC.38: 28 residues within 4Å: Chain G: E.106, R.107, G.109, H.110, N.111, D.122, L.125, T.127, A.128, Y.133, P.134, A.135, L.138, S.142, C.143, F.205, M.235, W.238, C.239, C.242, H.243, C.328, L.329, H.332, S.341, M.342 Ligands: HEC.37, HEC.40 17 PLIP interactions: 17 interactions with chain G, Hydrophobic interactions: G:D.122, G:L.125, G:L.125, G:A.128, G:Y.133, G:A.135, G:L.138, G:F.205, G:W.238, G:W.238, G:H.332, G:M.342 Hydrogen bonds: G:N.111, G:N.111 Salt bridges: G:R.107 Metal complexes: G:H.110, G:H.243 HEC.39: 21 residues within 4Å: Chain G: F.1, H.2, S.3, G.11, C.12, S.46, C.47, N.49, C.50, H.51, Y.62, C.140, H.144, P.146, S.168, S.170, Y.171, R.187, I.188 Ligands: HEC.40, HEC.41 21 PLIP interactions: 21 interactions with chain G, Hydrophobic interactions: G:F.1, G:F.1, G:Y.62, G:Y.62, G:H.144, G:P.146, G:I.188 Hydrogen bonds: G:F.1, G:F.1, G:H.2, G:S.3, G:S.168, G:S.170, G:Y.171, G:R.187 Salt bridges: G:R.187 pi-Stacking: G:F.1, G:H.2, G:H.51 Metal complexes: G:H.2, G:H.51 HEC.40: 27 residues within 4Å: Chain G: C.47, L.48, H.51, Y.62, I.64, T.81, P.82, G.83, F.86, H.110, I.112, L.138, H.139, C.140, C.143, H.144, Y.186, R.187, L.189, Y.218, Y.231, M.235, W.238, A.334, H.335 Ligands: HEC.38, HEC.39 18 PLIP interactions: 18 interactions with chain G, Hydrophobic interactions: G:L.48, G:H.51, G:I.64, G:I.64, G:I.112, G:I.112, G:L.138, G:L.189, G:L.189, G:Y.218, G:W.238 Hydrogen bonds: G:T.81, G:P.82, G:G.83, G:Y.186 Salt bridges: G:R.187 Metal complexes: G:H.144, G:H.335 HEC.41: 18 residues within 4Å: Chain G: F.1, H.2, V.6, A.7, E.8, C.9, C.12, H.13, M.36, L.38, Q.43, S.141, P.146, H.147, P.196, K.197, S.198 Ligands: HEC.39 17 PLIP interactions: 17 interactions with chain G, Hydrophobic interactions: G:F.1, G:V.6, G:A.7, G:L.38, G:Q.43, G:P.146, G:K.197 Hydrogen bonds: G:Q.43, G:K.197, G:S.198 Salt bridges: G:H.147 pi-Stacking: G:H.13, G:H.13, G:H.147, G:H.147 Metal complexes: G:H.13, G:H.147 HEC.42: 20 residues within 4Å: Chain E: C.9, E.10, H.13, M.15, M.36, L.37, K.197 Chain G: Y.251, H.257, K.264, F.265, I.269, A.294, P.295, V.326, C.400, C.403, H.404 Ligands: HEC.29, HEC.37 17 PLIP interactions: 14 interactions with chain G, 3 interactions with chain E, Hydrophobic interactions: G:Y.251, G:F.265, G:F.265, G:F.265, G:I.269, G:I.269, G:A.294, G:V.326, E:L.37 Hydrogen bonds: G:Y.251, G:Y.251 pi-Stacking: G:H.257, G:H.404 Metal complexes: G:H.257, G:H.404 Salt bridges: E:K.197, E:K.197

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, F. et al., Structure of Microbial Nanowires Reveals Stacked Hemes that Transport Electrons over Micrometers. Cell (2019)

Release Date

2019-04-10

Peptides

C-type cytochrome OmcS: ABCDEFG

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

C-type cytochrome OmcS

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