SMTL ID : 6nef.1 (1 other biounit)

Outer Membrane Cytochrome S Filament from Geobacter Sulfurreducens

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.42 Å

Oligo State

homo-9-mer

Ligands

54 x HEC: HEME C(Covalent)

HEC.1: 21 residues within 4Å: Chain A: H.2, V.6, A.7, E.8, C.9, C.12, H.13, M.36, L.38, Q.43, P.146, H.147, P.196, K.197, S.198 Chain C: A.398, C.400, N.401, H.404, K.406 Ligands: HEC.20 16 PLIP interactions: 13 interactions with chain A, 3 interactions with chain C, Hydrophobic interactions: A:V.6, A:A.7, A:L.38, A:P.146, A:P.146, A:K.197, C:A.398 Hydrogen bonds: A:Q.43, A:S.141, A:K.197, A:S.198, A:S.198 Salt bridges: A:H.147, C:K.406 Metal complexes: A:H.147 pi-Cation interactions: C:K.406 HEC.2: 15 residues within 4Å: Chain A: F.1, H.2, S.3, C.12, S.46, C.47, C.50, H.51, Y.62, H.144, S.168, S.170, Y.186, R.187 Ligands: HEC.3 12 PLIP interactions: 12 interactions with chain A, Hydrophobic interactions: A:F.1, A:Y.62, A:Y.62, A:H.144, A:R.187 Hydrogen bonds: A:F.1, A:F.1, A:H.2, A:S.170 Salt bridges: A:R.187 pi-Stacking: A:Y.62 Metal complexes: A:H.51 HEC.3: 20 residues within 4Å: Chain A: C.47, L.48, H.51, I.64, T.81, P.82, G.83, F.86, C.140, C.143, H.144, Y.186, R.187, Y.231, W.238, L.329, A.334, H.335 Ligands: HEC.2, HEC.4 15 PLIP interactions: 15 interactions with chain A, Hydrophobic interactions: A:L.48, A:I.64, A:I.64, A:F.86, A:R.187, A:W.238, A:W.238, A:A.334 Hydrogen bonds: A:T.81, A:G.83, A:Y.231 Salt bridges: A:R.187, A:H.335 pi-Cation interactions: A:H.144 Metal complexes: A:H.144 HEC.4: 22 residues within 4Å: Chain A: E.106, R.107, G.109, H.110, N.111, D.122, L.125, T.127, A.128, Y.133, A.135, S.142, F.205, C.239, C.242, H.243, H.332, S.341, M.342 Ligands: HEC.3, HEC.5, MG.7 9 PLIP interactions: 9 interactions with chain A, Hydrophobic interactions: A:A.128, A:Y.133, A:A.135, A:F.205 Hydrogen bonds: A:G.109, A:N.111 Salt bridges: A:R.107 Metal complexes: A:H.110, A:H.243 HEC.5: 19 residues within 4Å: Chain A: R.107, P.129, S.236, H.243, I.246, H.247, N.327, C.328, C.331, H.332, S.341 Chain B: E.10, M.15, H.16, S.18, L.19, G.20, M.24 Ligands: HEC.4 9 PLIP interactions: 5 interactions with chain B, 4 interactions with chain A, Hydrophobic interactions: B:M.15, A:H.243, A:I.246 Hydrogen bonds: B:M.15, B:G.20 pi-Cation interactions: B:H.16 Metal complexes: B:H.16 Salt bridges: A:R.107 pi-Stacking: A:H.332 HEC.6: 13 residues within 4Å: Chain A: Y.251, H.257, P.258, K.264, F.265, I.269, C.400, C.403, H.404 Chain B: M.15, L.37, K.197 Ligands: HEC.8 10 PLIP interactions: 8 interactions with chain A, 2 interactions with chain B, Hydrophobic interactions: A:Y.251, A:Y.251, A:F.265, A:I.269, B:L.37 pi-Stacking: A:H.404 pi-Cation interactions: A:H.404 Metal complexes: A:H.257, A:H.404 Salt bridges: B:K.197 HEC.8: 21 residues within 4Å: Chain A: A.398, C.400, N.401, H.404, K.406 Chain B: H.2, V.6, A.7, E.8, C.9, C.12, H.13, M.36, L.38, Q.43, P.146, H.147, P.196, K.197, S.198 Ligands: HEC.6 17 PLIP interactions: 4 interactions with chain A, 13 interactions with chain B, Hydrophobic interactions: A:A.398, A:H.404, B:V.6, B:A.7, B:L.38, B:P.146, B:P.146, B:K.197 Salt bridges: A:K.406, B:H.147 pi-Cation interactions: A:K.406 Hydrogen bonds: B:Q.43, B:S.141, B:K.197, B:S.198, B:S.198 Metal complexes: B:H.147 HEC.9: 15 residues within 4Å: Chain B: F.1, H.2, S.3, C.12, S.46, C.47, C.50, H.51, Y.62, H.144, S.168, S.170, Y.186, R.187 Ligands: HEC.10 12 PLIP interactions: 12 interactions with chain B, Hydrophobic interactions: B:F.1, B:Y.62, B:Y.62, B:H.144, B:R.187 Hydrogen bonds: B:F.1, B:F.1, B:H.2, B:S.170 Salt bridges: B:R.187 pi-Stacking: B:Y.62 Metal complexes: B:H.51 HEC.10: 20 residues within 4Å: Chain B: C.47, L.48, H.51, I.64, T.81, P.82, G.83, F.86, C.140, C.143, H.144, Y.186, R.187, Y.231, W.238, L.329, A.334, H.335 Ligands: HEC.9, HEC.11 15 PLIP interactions: 15 interactions with chain B, Hydrophobic interactions: B:L.48, B:I.64, B:I.64, B:F.86, B:R.187, B:W.238, B:W.238, B:A.334 Hydrogen bonds: B:T.81, B:G.83, B:Y.231 Salt bridges: B:R.187, B:H.335 pi-Cation interactions: B:H.144 Metal complexes: B:H.144 HEC.11: 22 residues within 4Å: Chain B: E.106, R.107, G.109, H.110, N.111, D.122, L.125, T.127, A.128, Y.133, A.135, S.142, F.205, C.239, C.242, H.243, H.332, S.341, M.342 Ligands: HEC.10, HEC.12, MG.14 9 PLIP interactions: 9 interactions with chain B, Hydrophobic interactions: B:A.128, B:Y.133, B:A.135, B:F.205 Hydrogen bonds: B:G.109, B:N.111 Salt bridges: B:R.107 Metal complexes: B:H.110, B:H.243 HEC.12: 19 residues within 4Å: Chain B: R.107, P.129, S.236, H.243, I.246, H.247, N.327, C.328, C.331, H.332, S.341 Chain D: E.10, M.15, H.16, S.18, L.19, G.20, M.24 Ligands: HEC.11 9 PLIP interactions: 4 interactions with chain B, 5 interactions with chain D, Hydrophobic interactions: B:H.243, B:I.246, D:M.15 Salt bridges: B:R.107 pi-Stacking: B:H.332 Hydrogen bonds: D:M.15, D:G.20 pi-Cation interactions: D:H.16 Metal complexes: D:H.16 HEC.13: 13 residues within 4Å: Chain B: Y.251, H.257, P.258, K.264, F.265, I.269, C.400, C.403, H.404 Chain D: M.15, L.37, K.197 Ligands: HEC.22 10 PLIP interactions: 8 interactions with chain B, 2 interactions with chain D, Hydrophobic interactions: B:Y.251, B:Y.251, B:F.265, B:I.269, D:L.37 pi-Stacking: B:H.404 pi-Cation interactions: B:H.404 Metal complexes: B:H.257, B:H.404 Salt bridges: D:K.197 HEC.15: 21 residues within 4Å: Chain C: H.2, V.6, A.7, E.8, C.9, C.12, H.13, M.36, L.38, Q.43, P.146, H.147, P.196, K.197, S.198 Chain E: A.398, C.400, N.401, H.404, K.406 Ligands: HEC.34 16 PLIP interactions: 3 interactions with chain E, 13 interactions with chain C, Hydrophobic interactions: E:A.398, C:V.6, C:A.7, C:L.38, C:P.146, C:P.146, C:K.197 Salt bridges: E:K.406, C:H.147 pi-Cation interactions: E:K.406 Hydrogen bonds: C:Q.43, C:S.141, C:K.197, C:S.198, C:S.198 Metal complexes: C:H.147 HEC.16: 15 residues within 4Å: Chain C: F.1, H.2, S.3, C.12, S.46, C.47, C.50, H.51, Y.62, H.144, S.168, S.170, Y.186, R.187 Ligands: HEC.17 12 PLIP interactions: 12 interactions with chain C, Hydrophobic interactions: C:F.1, C:Y.62, C:Y.62, C:H.144, C:R.187 Hydrogen bonds: C:F.1, C:F.1, C:H.2, C:S.170 Salt bridges: C:R.187 pi-Stacking: C:Y.62 Metal complexes: C:H.51 HEC.17: 20 residues within 4Å: Chain C: C.47, L.48, H.51, I.64, T.81, P.82, G.83, F.86, C.140, C.143, H.144, Y.186, R.187, Y.231, W.238, L.329, A.334, H.335 Ligands: HEC.16, HEC.18 15 PLIP interactions: 15 interactions with chain C, Hydrophobic interactions: C:L.48, C:I.64, C:I.64, C:F.86, C:R.187, C:W.238, C:W.238, C:A.334 Hydrogen bonds: C:T.81, C:G.83, C:Y.231 Salt bridges: C:R.187, C:H.335 pi-Cation interactions: C:H.144 Metal complexes: C:H.144 HEC.18: 22 residues within 4Å: Chain C: E.106, R.107, G.109, H.110, N.111, D.122, L.125, T.127, A.128, Y.133, A.135, S.142, F.205, C.239, C.242, H.243, H.332, S.341, M.342 Ligands: HEC.17, HEC.19, MG.21 9 PLIP interactions: 9 interactions with chain C, Hydrophobic interactions: C:A.128, C:Y.133, C:A.135, C:F.205 Hydrogen bonds: C:G.109, C:N.111 Salt bridges: C:R.107 Metal complexes: C:H.110, C:H.243 HEC.19: 19 residues within 4Å: Chain A: E.10, M.15, H.16, S.18, L.19, G.20, M.24 Chain C: R.107, P.129, S.236, H.243, I.246, H.247, N.327, C.328, C.331, H.332, S.341 Ligands: HEC.18 9 PLIP interactions: 4 interactions with chain C, 5 interactions with chain A, Hydrophobic interactions: C:H.243, C:I.246, A:M.15 Salt bridges: C:R.107 pi-Stacking: C:H.332 Hydrogen bonds: A:M.15, A:G.20 pi-Cation interactions: A:H.16 Metal complexes: A:H.16 HEC.20: 13 residues within 4Å: Chain A: M.15, L.37, K.197 Chain C: Y.251, H.257, P.258, K.264, F.265, I.269, C.400, C.403, H.404 Ligands: HEC.1 10 PLIP interactions: 8 interactions with chain C, 2 interactions with chain A, Hydrophobic interactions: C:Y.251, C:Y.251, C:F.265, C:I.269, A:L.37 pi-Stacking: C:H.404 pi-Cation interactions: C:H.404 Metal complexes: C:H.257, C:H.404 Salt bridges: A:K.197 HEC.22: 21 residues within 4Å: Chain B: A.398, C.400, N.401, H.404, K.406 Chain D: H.2, V.6, A.7, E.8, C.9, C.12, H.13, M.36, L.38, Q.43, P.146, H.147, P.196, K.197, S.198 Ligands: HEC.13 17 PLIP interactions: 13 interactions with chain D, 4 interactions with chain B, Hydrophobic interactions: D:V.6, D:A.7, D:L.38, D:P.146, D:P.146, D:K.197, B:A.398, B:H.404 Hydrogen bonds: D:Q.43, D:S.141, D:K.197, D:S.198, D:S.198 Salt bridges: D:H.147, B:K.406 Metal complexes: D:H.147 pi-Cation interactions: B:K.406 HEC.23: 15 residues within 4Å: Chain D: F.1, H.2, S.3, C.12, S.46, C.47, C.50, H.51, Y.62, H.144, S.168, S.170, Y.186, R.187 Ligands: HEC.24 12 PLIP interactions: 12 interactions with chain D, Hydrophobic interactions: D:F.1, D:Y.62, D:Y.62, D:H.144, D:R.187 Hydrogen bonds: D:F.1, D:F.1, D:H.2, D:S.170 Salt bridges: D:R.187 pi-Stacking: D:Y.62 Metal complexes: D:H.51 HEC.24: 20 residues within 4Å: Chain D: C.47, L.48, H.51, I.64, T.81, P.82, G.83, F.86, C.140, C.143, H.144, Y.186, R.187, Y.231, W.238, L.329, A.334, H.335 Ligands: HEC.23, HEC.25 15 PLIP interactions: 15 interactions with chain D, Hydrophobic interactions: D:L.48, D:I.64, D:I.64, D:F.86, D:R.187, D:W.238, D:W.238, D:A.334 Hydrogen bonds: D:T.81, D:G.83, D:Y.231 Salt bridges: D:R.187, D:H.335 pi-Cation interactions: D:H.144 Metal complexes: D:H.144 HEC.25: 22 residues within 4Å: Chain D: E.106, R.107, G.109, H.110, N.111, D.122, L.125, T.127, A.128, Y.133, A.135, S.142, F.205, C.239, C.242, H.243, H.332, S.341, M.342 Ligands: HEC.24, HEC.26, MG.28 9 PLIP interactions: 9 interactions with chain D, Hydrophobic interactions: D:A.128, D:Y.133, D:A.135, D:F.205 Hydrogen bonds: D:G.109, D:N.111 Salt bridges: D:R.107 Metal complexes: D:H.110, D:H.243 HEC.26: 19 residues within 4Å: Chain D: R.107, P.129, S.236, H.243, I.246, H.247, N.327, C.328, C.331, H.332, S.341 Chain F: E.10, M.15, H.16, S.18, L.19, G.20, M.24 Ligands: HEC.25 9 PLIP interactions: 4 interactions with chain D, 5 interactions with chain F, Hydrophobic interactions: D:H.243, D:I.246, F:M.15 Salt bridges: D:R.107 pi-Stacking: D:H.332 Hydrogen bonds: F:M.15, F:G.20 pi-Cation interactions: F:H.16 Metal complexes: F:H.16 HEC.27: 13 residues within 4Å: Chain D: Y.251, H.257, P.258, K.264, F.265, I.269, C.400, C.403, H.404 Chain F: M.15, L.37, K.197 Ligands: HEC.36 10 PLIP interactions: 8 interactions with chain D, 2 interactions with chain F, Hydrophobic interactions: D:Y.251, D:Y.251, D:F.265, D:I.269, F:L.37 pi-Stacking: D:H.404 pi-Cation interactions: D:H.404 Metal complexes: D:H.257, D:H.404 Salt bridges: F:K.197 HEC.29: 21 residues within 4Å: Chain E: H.2, V.6, A.7, E.8, C.9, C.12, H.13, M.36, L.38, Q.43, P.146, H.147, P.196, K.197, S.198 Chain G: A.398, C.400, N.401, H.404, K.406 Ligands: HEC.48 16 PLIP interactions: 13 interactions with chain E, 3 interactions with chain G, Hydrophobic interactions: E:V.6, E:A.7, E:L.38, E:P.146, E:P.146, E:K.197, G:A.398 Hydrogen bonds: E:Q.43, E:S.141, E:K.197, E:S.198, E:S.198 Salt bridges: E:H.147, G:K.406 Metal complexes: E:H.147 pi-Cation interactions: G:K.406 HEC.30: 15 residues within 4Å: Chain E: F.1, H.2, S.3, C.12, S.46, C.47, C.50, H.51, Y.62, H.144, S.168, S.170, Y.186, R.187 Ligands: HEC.31 12 PLIP interactions: 12 interactions with chain E, Hydrophobic interactions: E:F.1, E:Y.62, E:Y.62, E:H.144, E:R.187 Hydrogen bonds: E:F.1, E:F.1, E:H.2, E:S.170 Salt bridges: E:R.187 pi-Stacking: E:Y.62 Metal complexes: E:H.51 HEC.31: 20 residues within 4Å: Chain E: C.47, L.48, H.51, I.64, T.81, P.82, G.83, F.86, C.140, C.143, H.144, Y.186, R.187, Y.231, W.238, L.329, A.334, H.335 Ligands: HEC.30, HEC.32 15 PLIP interactions: 15 interactions with chain E, Hydrophobic interactions: E:L.48, E:I.64, E:I.64, E:F.86, E:R.187, E:W.238, E:W.238, E:A.334 Hydrogen bonds: E:T.81, E:G.83, E:Y.231 Salt bridges: E:R.187, E:H.335 pi-Cation interactions: E:H.144 Metal complexes: E:H.144 HEC.32: 22 residues within 4Å: Chain E: E.106, R.107, G.109, H.110, N.111, D.122, L.125, T.127, A.128, Y.133, A.135, S.142, F.205, C.239, C.242, H.243, H.332, S.341, M.342 Ligands: HEC.31, HEC.33, MG.35 9 PLIP interactions: 9 interactions with chain E, Hydrophobic interactions: E:A.128, E:Y.133, E:A.135, E:F.205 Hydrogen bonds: E:G.109, E:N.111 Salt bridges: E:R.107 Metal complexes: E:H.110, E:H.243 HEC.33: 19 residues within 4Å: Chain C: E.10, M.15, H.16, S.18, L.19, G.20, M.24 Chain E: R.107, P.129, S.236, H.243, I.246, H.247, N.327, C.328, C.331, H.332, S.341 Ligands: HEC.32 9 PLIP interactions: 4 interactions with chain E, 5 interactions with chain C, Hydrophobic interactions: E:H.243, E:I.246, C:M.15 Salt bridges: E:R.107 pi-Stacking: E:H.332 Hydrogen bonds: C:M.15, C:G.20 pi-Cation interactions: C:H.16 Metal complexes: C:H.16 HEC.34: 13 residues within 4Å: Chain C: M.15, L.37, K.197 Chain E: Y.251, H.257, P.258, K.264, F.265, I.269, C.400, C.403, H.404 Ligands: HEC.15 10 PLIP interactions: 8 interactions with chain E, 2 interactions with chain C, Hydrophobic interactions: E:Y.251, E:Y.251, E:F.265, E:I.269, C:L.37 pi-Stacking: E:H.404 pi-Cation interactions: E:H.404 Metal complexes: E:H.257, E:H.404 Salt bridges: C:K.197 HEC.36: 21 residues within 4Å: Chain D: A.398, C.400, N.401, H.404, K.406 Chain F: H.2, V.6, A.7, E.8, C.9, C.12, H.13, M.36, L.38, Q.43, P.146, H.147, P.196, K.197, S.198 Ligands: HEC.27 17 PLIP interactions: 13 interactions with chain F, 4 interactions with chain D, Hydrophobic interactions: F:V.6, F:A.7, F:L.38, F:P.146, F:P.146, F:K.197, D:A.398, D:H.404 Hydrogen bonds: F:Q.43, F:S.141, F:K.197, F:S.198, F:S.198 Salt bridges: F:H.147, D:K.406 Metal complexes: F:H.147 pi-Cation interactions: D:K.406 HEC.37: 15 residues within 4Å: Chain F: F.1, H.2, S.3, C.12, S.46, C.47, C.50, H.51, Y.62, H.144, S.168, S.170, Y.186, R.187 Ligands: HEC.38 12 PLIP interactions: 12 interactions with chain F, Hydrophobic interactions: F:F.1, F:Y.62, F:Y.62, F:H.144, F:R.187 Hydrogen bonds: F:F.1, F:F.1, F:H.2, F:S.170 Salt bridges: F:R.187 pi-Stacking: F:Y.62 Metal complexes: F:H.51 HEC.38: 20 residues within 4Å: Chain F: C.47, L.48, H.51, I.64, T.81, P.82, G.83, F.86, C.140, C.143, H.144, Y.186, R.187, Y.231, W.238, L.329, A.334, H.335 Ligands: HEC.37, HEC.39 15 PLIP interactions: 15 interactions with chain F, Hydrophobic interactions: F:L.48, F:I.64, F:I.64, F:F.86, F:R.187, F:W.238, F:W.238, F:A.334 Hydrogen bonds: F:T.81, F:G.83, F:Y.231 Salt bridges: F:R.187, F:H.335 pi-Cation interactions: F:H.144 Metal complexes: F:H.144 HEC.39: 22 residues within 4Å: Chain F: E.106, R.107, G.109, H.110, N.111, D.122, L.125, T.127, A.128, Y.133, A.135, S.142, F.205, C.239, C.242, H.243, H.332, S.341, M.342 Ligands: HEC.38, HEC.40, MG.42 9 PLIP interactions: 9 interactions with chain F, Hydrophobic interactions: F:A.128, F:Y.133, F:A.135, F:F.205 Hydrogen bonds: F:G.109, F:N.111 Salt bridges: F:R.107 Metal complexes: F:H.110, F:H.243 HEC.40: 19 residues within 4Å: Chain F: R.107, P.129, S.236, H.243, I.246, H.247, N.327, C.328, C.331, H.332, S.341 Chain H: E.10, M.15, H.16, S.18, L.19, G.20, M.24 Ligands: HEC.39 9 PLIP interactions: 5 interactions with chain H, 4 interactions with chain F, Hydrophobic interactions: H:M.15, F:H.243, F:I.246 Hydrogen bonds: H:M.15, H:G.20 pi-Cation interactions: H:H.16 Metal complexes: H:H.16 Salt bridges: F:R.107 pi-Stacking: F:H.332 HEC.41: 13 residues within 4Å: Chain F: Y.251, H.257, P.258, K.264, F.265, I.269, C.400, C.403, H.404 Chain H: M.15, L.37, K.197 Ligands: HEC.50 10 PLIP interactions: 2 interactions with chain H, 8 interactions with chain F, Hydrophobic interactions: H:L.37, F:Y.251, F:Y.251, F:F.265, F:I.269 Salt bridges: H:K.197 pi-Stacking: F:H.404 pi-Cation interactions: F:H.404 Metal complexes: F:H.257, F:H.404 HEC.43: 21 residues within 4Å: Chain G: H.2, V.6, A.7, E.8, C.9, C.12, H.13, M.36, L.38, Q.43, P.146, H.147, P.196, K.197, S.198 Chain I: A.398, C.400, N.401, H.404, K.406 Ligands: HEC.62 16 PLIP interactions: 13 interactions with chain G, 3 interactions with chain I, Hydrophobic interactions: G:V.6, G:A.7, G:L.38, G:P.146, G:P.146, G:K.197, I:A.398 Hydrogen bonds: G:Q.43, G:S.141, G:K.197, G:S.198, G:S.198 Salt bridges: G:H.147, I:K.406 Metal complexes: G:H.147 pi-Cation interactions: I:K.406 HEC.44: 15 residues within 4Å: Chain G: F.1, H.2, S.3, C.12, S.46, C.47, C.50, H.51, Y.62, H.144, S.168, S.170, Y.186, R.187 Ligands: HEC.45 12 PLIP interactions: 12 interactions with chain G, Hydrophobic interactions: G:F.1, G:Y.62, G:Y.62, G:H.144, G:R.187 Hydrogen bonds: G:F.1, G:F.1, G:H.2, G:S.170 Salt bridges: G:R.187 pi-Stacking: G:Y.62 Metal complexes: G:H.51 HEC.45: 20 residues within 4Å: Chain G: C.47, L.48, H.51, I.64, T.81, P.82, G.83, F.86, C.140, C.143, H.144, Y.186, R.187, Y.231, W.238, L.329, A.334, H.335 Ligands: HEC.44, HEC.46 15 PLIP interactions: 15 interactions with chain G, Hydrophobic interactions: G:L.48, G:I.64, G:I.64, G:F.86, G:R.187, G:W.238, G:W.238, G:A.334 Hydrogen bonds: G:T.81, G:G.83, G:Y.231 Salt bridges: G:R.187, G:H.335 pi-Cation interactions: G:H.144 Metal complexes: G:H.144 HEC.46: 22 residues within 4Å: Chain G: E.106, R.107, G.109, H.110, N.111, D.122, L.125, T.127, A.128, Y.133, A.135, S.142, F.205, C.239, C.242, H.243, H.332, S.341, M.342 Ligands: HEC.45, HEC.47, MG.49 9 PLIP interactions: 9 interactions with chain G, Hydrophobic interactions: G:A.128, G:Y.133, G:A.135, G:F.205 Hydrogen bonds: G:G.109, G:N.111 Salt bridges: G:R.107 Metal complexes: G:H.110, G:H.243 HEC.47: 19 residues within 4Å: Chain E: E.10, M.15, H.16, S.18, L.19, G.20, M.24 Chain G: R.107, P.129, S.236, H.243, I.246, H.247, N.327, C.328, C.331, H.332, S.341 Ligands: HEC.46 9 PLIP interactions: 4 interactions with chain G, 5 interactions with chain E, Hydrophobic interactions: G:H.243, G:I.246, E:M.15 Salt bridges: G:R.107 pi-Stacking: G:H.332 Hydrogen bonds: E:M.15, E:G.20 pi-Cation interactions: E:H.16 Metal complexes: E:H.16 HEC.48: 13 residues within 4Å: Chain E: M.15, L.37, K.197 Chain G: Y.251, H.257, P.258, K.264, F.265, I.269, C.400, C.403, H.404 Ligands: HEC.29 10 PLIP interactions: 8 interactions with chain G, 2 interactions with chain E, Hydrophobic interactions: G:Y.251, G:Y.251, G:F.265, G:I.269, E:L.37 pi-Stacking: G:H.404 pi-Cation interactions: G:H.404 Metal complexes: G:H.257, G:H.404 Salt bridges: E:K.197 HEC.50: 21 residues within 4Å: Chain F: A.398, C.400, N.401, H.404, K.406 Chain H: H.2, V.6, A.7, E.8, C.9, C.12, H.13, M.36, L.38, Q.43, P.146, H.147, P.196, K.197, S.198 Ligands: HEC.41 17 PLIP interactions: 13 interactions with chain H, 4 interactions with chain F, Hydrophobic interactions: H:V.6, H:A.7, H:L.38, H:P.146, H:P.146, H:K.197, F:A.398, F:H.404 Hydrogen bonds: H:Q.43, H:S.141, H:K.197, H:S.198, H:S.198 Salt bridges: H:H.147, F:K.406 Metal complexes: H:H.147 pi-Cation interactions: F:K.406 HEC.51: 15 residues within 4Å: Chain H: F.1, H.2, S.3, C.12, S.46, C.47, C.50, H.51, Y.62, H.144, S.168, S.170, Y.186, R.187 Ligands: HEC.52 12 PLIP interactions: 12 interactions with chain H, Hydrophobic interactions: H:F.1, H:Y.62, H:Y.62, H:H.144, H:R.187 Hydrogen bonds: H:F.1, H:F.1, H:H.2, H:S.170 Salt bridges: H:R.187 pi-Stacking: H:Y.62 Metal complexes: H:H.51 HEC.52: 20 residues within 4Å: Chain H: C.47, L.48, H.51, I.64, T.81, P.82, G.83, F.86, C.140, C.143, H.144, Y.186, R.187, Y.231, W.238, L.329, A.334, H.335 Ligands: HEC.51, HEC.53 15 PLIP interactions: 15 interactions with chain H, Hydrophobic interactions: H:L.48, H:I.64, H:I.64, H:F.86, H:R.187, H:W.238, H:W.238, H:A.334 Hydrogen bonds: H:T.81, H:G.83, H:Y.231 Salt bridges: H:R.187, H:H.335 pi-Cation interactions: H:H.144 Metal complexes: H:H.144 HEC.53: 22 residues within 4Å: Chain H: E.106, R.107, G.109, H.110, N.111, D.122, L.125, T.127, A.128, Y.133, A.135, S.142, F.205, C.239, C.242, H.243, H.332, S.341, M.342 Ligands: HEC.52, HEC.54, MG.56 9 PLIP interactions: 9 interactions with chain H, Hydrophobic interactions: H:A.128, H:Y.133, H:A.135, H:F.205 Hydrogen bonds: H:G.109, H:N.111 Salt bridges: H:R.107 Metal complexes: H:H.110, H:H.243 HEC.54: 12 residues within 4Å: Chain H: R.107, P.129, S.236, H.243, I.246, H.247, N.327, C.328, C.331, H.332, S.341 Ligands: HEC.53 5 PLIP interactions: 5 interactions with chain H, Hydrophobic interactions: H:H.243, H:I.246 Salt bridges: H:R.107 pi-Stacking: H:H.332 Metal complexes: H:H.332 HEC.55: 9 residues within 4Å: Chain H: Y.251, H.257, P.258, K.264, F.265, I.269, C.400, C.403, H.404 8 PLIP interactions: 8 interactions with chain H, Hydrophobic interactions: H:Y.251, H:Y.251, H:F.265, H:I.269 pi-Stacking: H:H.404 pi-Cation interactions: H:H.404 Metal complexes: H:H.257, H:H.404 HEC.57: 15 residues within 4Å: Chain I: H.2, V.6, A.7, E.8, C.9, C.12, H.13, M.36, L.38, Q.43, P.146, H.147, P.196, K.197, S.198 13 PLIP interactions: 13 interactions with chain I, Hydrophobic interactions: I:V.6, I:A.7, I:L.38, I:P.146, I:P.146, I:K.197 Hydrogen bonds: I:Q.43, I:S.141, I:K.197, I:S.198, I:S.198 Salt bridges: I:H.147 Metal complexes: I:H.147 HEC.58: 15 residues within 4Å: Chain I: F.1, H.2, S.3, C.12, S.46, C.47, C.50, H.51, Y.62, H.144, S.168, S.170, Y.186, R.187 Ligands: HEC.59 12 PLIP interactions: 12 interactions with chain I, Hydrophobic interactions: I:F.1, I:Y.62, I:Y.62, I:H.144, I:R.187 Hydrogen bonds: I:F.1, I:F.1, I:H.2, I:S.170 Salt bridges: I:R.187 pi-Stacking: I:Y.62 Metal complexes: I:H.51 HEC.59: 20 residues within 4Å: Chain I: C.47, L.48, H.51, I.64, T.81, P.82, G.83, F.86, C.140, C.143, H.144, Y.186, R.187, Y.231, W.238, L.329, A.334, H.335 Ligands: HEC.58, HEC.60 15 PLIP interactions: 15 interactions with chain I, Hydrophobic interactions: I:L.48, I:I.64, I:I.64, I:F.86, I:R.187, I:W.238, I:W.238, I:A.334 Hydrogen bonds: I:T.81, I:G.83, I:Y.231 Salt bridges: I:R.187, I:H.335 pi-Cation interactions: I:H.144 Metal complexes: I:H.144 HEC.60: 22 residues within 4Å: Chain I: E.106, R.107, G.109, H.110, N.111, D.122, L.125, T.127, A.128, Y.133, A.135, S.142, F.205, C.239, C.242, H.243, H.332, S.341, M.342 Ligands: HEC.59, HEC.61, MG.63 9 PLIP interactions: 9 interactions with chain I, Hydrophobic interactions: I:A.128, I:Y.133, I:A.135, I:F.205 Hydrogen bonds: I:G.109, I:N.111 Salt bridges: I:R.107 Metal complexes: I:H.110, I:H.243 HEC.61: 19 residues within 4Å: Chain G: E.10, M.15, H.16, S.18, L.19, G.20, M.24 Chain I: R.107, P.129, S.236, H.243, I.246, H.247, N.327, C.328, C.331, H.332, S.341 Ligands: HEC.60 9 PLIP interactions: 4 interactions with chain I, 5 interactions with chain G, Hydrophobic interactions: I:H.243, I:I.246, G:M.15 Salt bridges: I:R.107 pi-Stacking: I:H.332 Hydrogen bonds: G:M.15, G:G.20 pi-Cation interactions: G:H.16 Metal complexes: G:H.16 HEC.62: 13 residues within 4Å: Chain G: M.15, L.37, K.197 Chain I: Y.251, H.257, P.258, K.264, F.265, I.269, C.400, C.403, H.404 Ligands: HEC.43 10 PLIP interactions: 8 interactions with chain I, 2 interactions with chain G, Hydrophobic interactions: I:Y.251, I:Y.251, I:F.265, I:I.269, G:L.37 pi-Stacking: I:H.404 pi-Cation interactions: I:H.404 Metal complexes: I:H.257, I:H.404 Salt bridges: G:K.197

9 x MG: MAGNESIUM ION(Non-covalent)

MG.7: 5 residues within 4Å: Chain A: E.106, G.109, N.111, D.122 Ligands: HEC.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.106, A:G.109, A:D.122 MG.14: 5 residues within 4Å: Chain B: E.106, G.109, N.111, D.122 Ligands: HEC.11 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:E.106, B:G.109, B:D.122 MG.21: 5 residues within 4Å: Chain C: E.106, G.109, N.111, D.122 Ligands: HEC.18 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:E.106, C:G.109, C:D.122 MG.28: 5 residues within 4Å: Chain D: E.106, G.109, N.111, D.122 Ligands: HEC.25 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:E.106, D:G.109, D:D.122 MG.35: 5 residues within 4Å: Chain E: E.106, G.109, N.111, D.122 Ligands: HEC.32 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:E.106, E:G.109, E:D.122 MG.42: 5 residues within 4Å: Chain F: E.106, G.109, N.111, D.122 Ligands: HEC.39 3 PLIP interactions: 3 interactions with chain F Metal complexes: F:E.106, F:G.109, F:D.122 MG.49: 5 residues within 4Å: Chain G: E.106, G.109, N.111, D.122 Ligands: HEC.46 3 PLIP interactions: 3 interactions with chain G Metal complexes: G:E.106, G:G.109, G:D.122 MG.56: 5 residues within 4Å: Chain H: E.106, G.109, N.111, D.122 Ligands: HEC.53 3 PLIP interactions: 3 interactions with chain H Metal complexes: H:E.106, H:G.109, H:D.122 MG.63: 5 residues within 4Å: Chain I: E.106, G.109, N.111, D.122 Ligands: HEC.60 3 PLIP interactions: 3 interactions with chain I Metal complexes: I:E.106, I:G.109, I:D.122

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Filman, D.J. et al., Cryo-EM reveals the structural basis of long-range electron transport in a cytochrome-based bacterial nanowire. Commun Biol (2019)

Release Date

2019-07-03

Peptides

C-type cytochrome OmcS: ABCDEFGHI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

I
A

C-type cytochrome OmcS

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