SMTL ID : 6egs.1 (1 other biounit)

Crystal structure of the GalNAc-T2 F104S mutant in complex with UDP-GalNAc

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: D.156, H.158, H.291 Ligands: UD2.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.156, A:H.158, A:H.291

1 x UD2: URIDINE-DIPHOSPHATE-N-ACETYLGALACTOSAMINE(Non-covalent)

UD2.2: 22 residues within 4Å: Chain A: T.75, F.76, H.77, D.108, R.133, G.135, L.136, S.139, R.140, D.156, H.158, A.239, G.240, G.241, L.242, V.262, G.264, E.266, N.267, H.291, H.297 Ligands: MN.1 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:L.242 Hydrogen bonds: A:D.108, A:S.139, A:R.140, A:R.140, A:D.156, A:D.156, A:G.241, A:N.267, A:N.267 Water bridges: A:S.157 Salt bridges: A:H.158, A:H.291, A:H.297, A:H.297

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

de Las Rivas, M. et al., Structural Analysis of a GalNAc-T2 Mutant Reveals an Induced-Fit Catalytic Mechanism for GalNAc-Ts. Chemistry (2018)

Release Date

2018-04-11

Peptides

Polypeptide N-acetylgalactosaminyltransferase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Polypeptide N-acetylgalactosaminyltransferase 2

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