SMTL ID : 6egs.2 (1 other biounit)

Crystal structure of the GalNAc-T2 F104S mutant in complex with UDP-GalNAc

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: D.156, H.158, H.291 Ligands: UD2.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.156, A:H.158, A:H.291

1 x UD2: URIDINE-DIPHOSPHATE-N-ACETYLGALACTOSAMINE(Non-covalent)

UD2.2: 19 residues within 4Å: Chain A: T.75, F.76, H.77, D.108, R.133, G.135, L.136, R.140, D.156, S.157, H.158, G.240, G.241, V.262, W.263, G.264, E.266, H.291 Ligands: MN.1 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:T.75, A:H.77, A:D.108, A:D.108, A:R.140, A:R.140, A:D.156, A:S.157, A:S.157, A:H.158, A:G.240, A:G.241, A:G.264, A:G.264 Water bridges: A:N.267 Salt bridges: A:H.158, A:H.291

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

de Las Rivas, M. et al., Structural Analysis of a GalNAc-T2 Mutant Reveals an Induced-Fit Catalytic Mechanism for GalNAc-Ts. Chemistry (2018)

Release Date

2018-04-11

Peptides

Polypeptide N-acetylgalactosaminyltransferase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Polypeptide N-acetylgalactosaminyltransferase 2

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