SMTL ID : 6eh5.1

003 Human T-Cell Receptor specific for HIV GAG epitope SLYNTVATL carried by Human Leukocyte Antigen HLA-A*0201

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.29 Å

Oligo State

hetero-1-1-mer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: Y.121, Q.122, P.200, S.201, P.202 Chain B: S.131, E.132, A.133 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:Q.122, A:P.202, B:S.131, B:E.132, B:A.133 GOL.2: 6 residues within 4Å: Chain A: N.112, I.113, Q.114, D.167, F.168, K.169 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.112, A:Q.114, A:K.169, A:K.169 Water bridges: A:N.115, A:K.169, A:K.169 GOL.3: 9 residues within 4Å: Chain A: S.128, S.129, D.130, K.131 Chain B: E.124, A.126, L.146, T.148 Ligands: EDO.12 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:A.126, B:L.146, B:T.148, A:S.129, A:D.130, A:K.131

27 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 6 residues within 4Å: Chain A: Q.39, G.42, K.43 Chain B: L.89, R.110 Ligands: EDO.18 Ligand excluded by PLIP EDO.5: 6 residues within 4Å: Chain A: R.38, Q.39, D.40, K.43, G.44, T.46 Ligand excluded by PLIP EDO.6: 3 residues within 4Å: Chain A: S.29, A.30, K.69 Ligand excluded by PLIP EDO.7: 4 residues within 4Å: Chain A: F.198, F.199, P.200, S.201 Ligand excluded by PLIP EDO.8: 6 residues within 4Å: Chain A: L.45, T.46, S.47 Chain B: L.103, H.104, F.105 Ligand excluded by PLIP EDO.9: 2 residues within 4Å: Chain A: D.196, F.198 Ligand excluded by PLIP EDO.10: 4 residues within 4Å: Chain A: D.125, S.126, K.127, S.129 Ligand excluded by PLIP EDO.11: 2 residues within 4Å: Chain A: N.19, A.79 Ligand excluded by PLIP EDO.12: 6 residues within 4Å: Chain A: S.128, S.129, D.130, K.131 Chain B: E.124 Ligands: GOL.3 Ligand excluded by PLIP EDO.13: 6 residues within 4Å: Chain A: M.163, R.164, S.165, M.166 Chain B: S.168, G.169 Ligand excluded by PLIP EDO.14: 6 residues within 4Å: Chain A: T.6, I.8, N.23, C.24, S.25 Ligands: EDO.16 Ligand excluded by PLIP EDO.15: 4 residues within 4Å: Chain A: P.15, K.110, S.141, Q.142 Ligand excluded by PLIP EDO.16: 6 residues within 4Å: Chain A: T.6, I.8, N.23, S.25, R.73 Ligands: EDO.14 Ligand excluded by PLIP EDO.18: 6 residues within 4Å: Chain B: R.10, Y.11, N.107, G.108, R.110 Ligands: EDO.4 Ligand excluded by PLIP EDO.19: 5 residues within 4Å: Chain B: Q.38, T.39, P.40, L.89, R.110 Ligand excluded by PLIP EDO.20: 5 residues within 4Å: Chain A: R.124 Chain B: P.130, I.135, W.201, D.244 Ligand excluded by PLIP EDO.21: 3 residues within 4Å: Chain B: Y.215, L.217, T.232 Ligand excluded by PLIP EDO.22: 3 residues within 4Å: Chain B: E.83, G.85, D.86 Ligand excluded by PLIP EDO.23: 2 residues within 4Å: Chain B: K.229, V.231 Ligand excluded by PLIP EDO.24: 3 residues within 4Å: Chain B: T.8, P.9, R.10 Ligand excluded by PLIP EDO.25: 5 residues within 4Å: Chain B: T.8, T.21, L.22, S.23, E.76 Ligand excluded by PLIP EDO.26: 1 residues within 4Å: Ligands: EDO.28 Ligand excluded by PLIP EDO.27: 1 residues within 4Å: Ligands: EDO.29 Ligand excluded by PLIP EDO.28: 3 residues within 4Å: Chain B: F.51, D.97 Ligands: EDO.26 Ligand excluded by PLIP EDO.29: 4 residues within 4Å: Chain B: F.70, N.72, R.74 Ligands: EDO.27 Ligand excluded by PLIP EDO.30: 3 residues within 4Å: Chain B: R.64, T.81, E.83 Ligand excluded by PLIP EDO.31: 6 residues within 4Å: Chain B: D.116, N.118, E.222, W.223, T.224, Q.225 Ligand excluded by PLIP

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.17: 5 residues within 4Å: Chain B: S.197, T.199, F.200, N.203, N.206 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.197, B:N.203, B:N.206 Water bridges: B:S.197

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Holland, C.J. et al., In Silicoand Structural Analyses Demonstrate That Intrinsic Protein Motions Guide T Cell Receptor Complementarity Determining Region Loop Flexibility. Front Immunol (2018)

Release Date

2018-04-18

Peptides

Human T Cell Receptor Alpha Chain: A
Human T Cell Receptor Beta Chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Human T Cell Receptor Alpha Chain

Human T Cell Receptor Beta Chain

Related Entries With Identical Sequence