SMTL ID : 6fr3.1

003 TCR Study of CDR Loop Flexibility

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

hetero-1-1-mer

Ligands

39 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: Q.39, D.40, P.41, A.87, T.88, K.106 Ligands: EDO.16 Ligand excluded by PLIP EDO.2: 6 residues within 4Å: Chain A: S.132, S.177, N.178, K.179, S.180, F.182 Ligand excluded by PLIP EDO.3: 6 residues within 4Å: Chain A: T.6, Q.7, I.8, N.23, C.24, S.25 Ligand excluded by PLIP EDO.4: 5 residues within 4Å: Chain A: V.5, T.6, Q.7, G.102, S.103 Ligand excluded by PLIP EDO.5: 6 residues within 4Å: Chain A: A.185, F.188, N.189, S.191, I.193, F.199 Ligand excluded by PLIP EDO.6: 7 residues within 4Å: Chain A: S.66, L.67, D.68, R.73, S.74, T.75 Ligands: EDO.8 Ligand excluded by PLIP EDO.7: 2 residues within 4Å: Chain A: A.79 Ligands: EDO.15 Ligand excluded by PLIP EDO.8: 4 residues within 4Å: Chain A: R.73, T.75, Y.77 Ligands: EDO.6 Ligand excluded by PLIP EDO.9: 4 residues within 4Å: Chain A: D.125, S.126, K.127, S.129 Ligand excluded by PLIP EDO.10: 4 residues within 4Å: Chain A: F.26, S.71, G.72, R.73 Ligand excluded by PLIP EDO.11: 7 residues within 4Å: Chain A: V.120, Y.121, Q.122, C.184, A.185, F.199, P.200 Ligand excluded by PLIP EDO.12: 6 residues within 4Å: Chain A: S.47, L.48, L.49, L.50 Chain B: P.102 Ligands: EDO.14 Ligand excluded by PLIP EDO.13: 4 residues within 4Å: Chain A: D.130, K.131, N.178 Chain B: E.124 Ligand excluded by PLIP EDO.14: 6 residues within 4Å: Chain A: L.48, L.49, L.50, Q.58 Chain B: P.102 Ligands: EDO.12 Ligand excluded by PLIP EDO.15: 3 residues within 4Å: Chain A: N.19, A.79 Ligands: EDO.7 Ligand excluded by PLIP EDO.16: 4 residues within 4Å: Chain A: Q.39 Chain B: Q.38 Ligands: EDO.1, EDO.18 Ligand excluded by PLIP EDO.17: 7 residues within 4Å: Chain A: S.128, S.129, K.131 Chain B: E.124, A.126, L.146, T.148 Ligand excluded by PLIP EDO.18: 9 residues within 4Å: Chain A: Q.39, D.40, P.41, G.42, K.43 Chain B: L.89, R.110 Ligands: EDO.16, EDO.24 Ligand excluded by PLIP EDO.19: 6 residues within 4Å: Chain A: R.38, Q.39, D.40, K.43, G.44, T.46 Ligand excluded by PLIP EDO.20: 7 residues within 4Å: Chain A: L.90, F.101, G.102, S.103 Chain B: G.43, L.44 Ligands: EDO.39 Ligand excluded by PLIP EDO.21: 3 residues within 4Å: Chain B: W.160, K.164, E.165 Ligand excluded by PLIP EDO.22: 7 residues within 4Å: Chain B: Y.11, L.12, I.13, H.154, Y.215, G.216, T.232 Ligand excluded by PLIP EDO.23: 5 residues within 4Å: Chain B: L.217, S.218, E.219, V.231, T.232 Ligand excluded by PLIP EDO.24: 8 residues within 4Å: Chain B: R.10, Y.11, L.89, N.107, G.108, R.110 Ligands: EDO.18, EDO.38 Ligand excluded by PLIP EDO.25: 2 residues within 4Å: Chain B: R.74 Ligands: EDO.34 Ligand excluded by PLIP EDO.26: 3 residues within 4Å: Chain B: I.234, V.235, S.236 Ligand excluded by PLIP EDO.27: 5 residues within 4Å: Chain B: E.156, S.158, W.160, E.165, Q.213 Ligand excluded by PLIP EDO.28: 3 residues within 4Å: Chain B: V.166, H.167, S.168 Ligand excluded by PLIP EDO.29: 6 residues within 4Å: Chain A: G.44, L.45, T.46 Chain B: F.105, G.106, N.107 Ligand excluded by PLIP EDO.30: 3 residues within 4Å: Chain B: S.197, T.199, F.200 Ligand excluded by PLIP EDO.31: 2 residues within 4Å: Chain B: Q.55, K.58 Ligand excluded by PLIP EDO.32: 6 residues within 4Å: Chain A: K.98, Y.100 Chain B: Q.45, F.46, G.59, N.60 Ligand excluded by PLIP EDO.33: 2 residues within 4Å: Chain B: V.161, V.166 Ligand excluded by PLIP EDO.34: 3 residues within 4Å: Chain B: S.23, R.74 Ligands: EDO.25 Ligand excluded by PLIP EDO.35: 6 residues within 4Å: Chain B: D.116, N.118, E.222, W.223, T.224, Q.225 Ligand excluded by PLIP EDO.36: 4 residues within 4Å: Chain B: T.39, G.41, Q.42, G.85 Ligand excluded by PLIP EDO.37: 4 residues within 4Å: Chain B: T.15, Q.18, L.117, D.221 Ligand excluded by PLIP EDO.38: 8 residues within 4Å: Chain B: V.5, T.6, Q.7, R.10, G.106, N.107, G.108 Ligands: EDO.24 Ligand excluded by PLIP EDO.39: 8 residues within 4Å: Chain A: F.101, G.102, S.103 Chain B: Q.42, G.43, L.44, Q.45 Ligands: EDO.20 Ligand excluded by PLIP

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.40: 3 residues within 4Å: Chain B: Q.202, A.243, D.244 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.244 Water bridges: B:Q.202 PEG.41: 5 residues within 4Å: Chain B: S.28, G.29, H.30, F.96, S.101 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.101

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Holland, C.J. et al., In Silicoand Structural Analyses Demonstrate That Intrinsic Protein Motions Guide T Cell Receptor Complementarity Determining Region Loop Flexibility. Front Immunol (2018)

Release Date

2018-04-18

Peptides

003 TCR Alpha Chain: A
003 TCR Beta Chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

003 TCR Alpha Chain

003 TCR Beta Chain

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