SMTL ID : 6evl.1

Crystal structure of an unlignaded peptide-substrate-binding domain of human type II collagen prolyl 4-hydroxylase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.87 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: R.70, E.73, R.77 5 PLIP interactions: 5 interactions with chain A Water bridges: A:K.39, A:R.70 Salt bridges: A:K.39, A:R.70, A:R.77

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 3 residues within 4Å: Chain A: L.32, W.33, Q.36 No protein-ligand interaction detected (PLIP)

2 x GLY: GLYCINE(Non-covalent)

GLY.3: 4 residues within 4Å: Chain A: Y.22, D.56, Y.57, Y.60 6 PLIP interactions: 2 Ligand-Ligand interactions, 4 interactions with chain A Hydrogen bonds: G.3, G.3, A:D.56 Water bridges: A:D.56, A:D.56 Salt bridges: A:R.87 GLY.4: 5 residues within 4Å: Chain A: Y.60, F.63, N.91, Y.94, F.95 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Ligand interactions Water bridges: A:Y.60 Hydrogen bonds: G.4, G.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Murthy, A.V. et al., Structural enzymology binding studies of the peptide-substrate-binding domain of human collagen prolyl 4-hydroxylase (type-II): High affinity peptides have a PxGP sequence motif. Protein Sci. (2018)

Release Date

2018-09-12

Peptides

Prolyl 4-hydroxylase subunit alpha-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Prolyl 4-hydroxylase subunit alpha-2

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