SMTL ID : 6evm.1

Crystal structure of a Pro-9 complexed peptide-substrate-binding domain of human type II collagen prolyl 4-hydroxylase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x PRO- PRO- PRO- PRO- PRO- PRO- PRO- PRO- PRO: Pro-9(Non-covalent)

PRO-PRO-PRO-PRO-PRO-PRO-PRO-PRO-PRO.1: 9 residues within 4Å: Chain A: R.19, Y.22, N.23, D.56, Y.57, Y.60, R.87, G.90, N.91 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Y.57, A:Y.60, A:R.87, A:R.87 Hydrogen bonds: A:N.23, A:Y.57 Water bridges: A:R.87, A:R.87, A:R.93, A:Q.97 Salt bridges: A:R.19

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: S.84, H.85, E.86 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.85

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 3 residues within 4Å: Chain A: L.32, W.33, Q.36 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Murthy, A.V. et al., Structural enzymology binding studies of the peptide-substrate-binding domain of human collagen prolyl 4-hydroxylase (type-II): High affinity peptides have a PxGP sequence motif. Protein Sci. (2018)

Release Date

2018-09-12

Peptides

Prolyl 4-hydroxylase subunit alpha-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Prolyl 4-hydroxylase subunit alpha-2

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