SMTL ID : 6ezs.1 (1 other biounit)

Crystal structure of GH20 Exo beta-N-Acetylglucosaminidase from Vibrio harveyi in complex with N-acetylglucosamine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG.1: 12 residues within 4Å: Chain A: R.274, H.373, Q.398, D.437, W.487, W.505, Y.530, D.532, M.533, W.546, W.582, E.584 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:W.487, A:W.505 Hydrogen bonds: A:R.274, A:R.274, A:Y.530, A:Y.530 Water bridges: A:H.373, A:Q.398, A:E.584, A:E.584

1 x MLI: MALONATE ION(Non-functional Binders)

MLI.2: 7 residues within 4Å: Chain A: E.208, G.209, S.228, H.232, R.266, N.295, G.361 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:N.295 Hydrogen bonds: A:E.208, A:S.228, A:N.295, A:G.361 Salt bridges: A:H.232, A:R.266

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Meekrathok, P. et al., Crystal structure of GH20 Exo beta-N-Acetylglucosaminidase from Vibrio harveyi. To Be Published

Release Date

2018-12-12

Peptides

Beta-N-acetylglucosaminidase Nag2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-N-acetylglucosaminidase Nag2

Related Entries With Identical Sequence