SMTL ID : 6f0l.1

S. cerevisiae MCM double hexamer bound to duplex DNA

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-2-2-2-mer

Ligands

4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 13 residues within 4Å: Chain B: S.370, I.371, Y.372, P.411, S.412, T.413, A.414, K.415, S.416, Q.417 Chain D: R.549, I.650, R.651 13 PLIP interactions: 10 interactions with chain B, 3 interactions with chain D Hydrogen bonds: B:Y.372, B:Y.372, B:S.412, B:T.413, B:A.414, B:K.415, B:S.416, B:S.416, B:Q.417 Salt bridges: B:K.415, D:R.549, D:R.651, D:R.651 ADP.2: 15 residues within 4Å: Chain A: R.676, V.807, R.808 Chain D: S.377, I.378, F.379, P.418, G.419, T.420, A.421, K.422, S.423, Q.424, I.568, V.572 14 PLIP interactions: 10 interactions with chain D, 4 interactions with chain A Hydrogen bonds: D:F.379, D:F.379, D:G.419, D:T.420, D:T.420, D:A.421, D:S.423, D:Q.424, A:R.808 Salt bridges: D:K.422, D:K.422, A:R.676, A:R.808, A:R.808 ADP.3: 13 residues within 4Å: Chain H: S.370, I.371, Y.372, P.411, S.412, T.413, A.414, K.415, S.416, Q.417 Chain J: R.549, I.650, R.651 13 PLIP interactions: 10 interactions with chain H, 3 interactions with chain J Hydrogen bonds: H:Y.372, H:Y.372, H:S.412, H:T.413, H:A.414, H:K.415, H:S.416, H:S.416, H:Q.417 Salt bridges: H:K.415, J:R.549, J:R.651, J:R.651 ADP.4: 15 residues within 4Å: Chain G: R.676, V.807, R.808 Chain J: S.377, I.378, F.379, P.418, G.419, T.420, A.421, K.422, S.423, Q.424, I.568, V.572 14 PLIP interactions: 10 interactions with chain J, 4 interactions with chain G Hydrogen bonds: J:F.379, J:F.379, J:G.419, J:T.420, J:T.420, J:A.421, J:S.423, J:Q.424, G:R.808 Salt bridges: J:K.422, J:K.422, G:R.676, G:R.808, G:R.808

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abid Ali, F. et al., Cryo-EM structure of a licensed DNA replication origin. Nat Commun (2017)

Release Date

2017-12-06

Peptides

DNA replication licensing factor MCM2: AG
DNA replication licensing factor MCM3: BH
DNA replication licensing factor MCM4: CI
Minichromosome maintenance protein 5: DJ
DNA replication licensing factor MCM6: EK
DNA replication licensing factor MCM7: FL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
2

G
A

B
3

H
B

C
4

I
C

D
5

J
D

E
6

K
E

F
7

L
F

DNA replication licensing factor MCM2

DNA replication licensing factor MCM3

DNA replication licensing factor MCM4

Minichromosome maintenance protein 5

DNA replication licensing factor MCM6

DNA replication licensing factor MCM7

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