SMTL ID : 6f0w.1

prolyl hydroxylase in complex with hypoxia inducible factor oxygen degradation domain peptide fragment from Trichoplax adhaerens

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

hetero-1-1-mer

Ligands

1 x OGA: N-OXALYLGLYCINE(Non-covalent)

OGA.1: 15 residues within 4Å: Chain A: R.105, M.152, Y.156, Y.163, H.166, D.168, L.180, Y.182, L.196, H.227, V.229, R.236, W.242 Chain B: P.10 Ligands: MN.2 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Y.182 Water bridges: A:R.105, A:Y.156, A:R.236, A:T.240 Salt bridges: A:R.105, A:H.166, A:R.236

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 4 residues within 4Å: Chain A: H.166, D.168, H.227 Ligands: OGA.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.166, A:D.168, A:H.227, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lippl, K. et al., Born to sense: biophysical analyses of the oxygen sensing prolyl hydroxylase from the simplest animal Trichoplax adhaerens. Hypoxia (Auckl) (2018)

Release Date

2018-10-03

Peptides

HIF prolyl hydroxylase: A
Hypoxia inducible factor, alpha subunit: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
S

HIF prolyl hydroxylase

Hypoxia inducible factor, alpha subunit

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