SMTL ID : 6f2l.1

Crystal structure of the complex between PPARgamma LBD and the ligand LJ570: structure obtained from crystals of the apo-form soaked for 15 days.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

1 x AXY: (2S)-3-(biphenyl-4-yl)-2-(biphenyl-4-yloxy)propanoic acid(Non-covalent)

AXY.1: 17 residues within 4Å: Chain A: F.109, Q.110, C.112, Q.113, S.116, H.150, I.153, Y.154, L.157, I.168, F.190, M.191, H.276, L.280, M.290, L.296, Y.300 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.109, A:F.109, A:I.153, A:Y.154, A:L.157, A:I.168, A:F.190, A:L.280 Hydrogen bonds: A:S.116, A:Y.300 Salt bridges: A:H.150, A:H.276

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Laghezza, A. et al., Identification of the First PPAR alpha / gamma Dual Agonist Able To Bind to Canonical and Alternative Sites of PPAR gamma and To Inhibit Its Cdk5-Mediated Phosphorylation. J.Med.Chem. (2018)

Release Date

2018-01-10

Peptides

Peroxisome proliferator-activated receptor gamma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor gamma

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