SMTL ID : 6t9c.1

Crystal structure of the complex between PPARgamma LBD and the ligand NV1346 (3a)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

1 x MX8: 4-hexoxy-~{N}-[(2~{S})-3-methyl-1-(oxidanylamino)-1-oxidanylidene-butan-2-yl]benzamide(Non-covalent)

MX8.1: 18 residues within 4Å: Chain A: F.53, F.109, C.112, Q.113, R.115, S.116, A.119, E.122, I.123, H.150, Y.154, M.156, L.157, F.190, H.276, L.280, L.296, Y.300 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.53, A:F.109, A:Q.113, A:A.119, A:I.123, A:Y.154, A:L.157, A:F.190, A:L.296 Hydrogen bonds: A:S.116, A:S.116, A:H.150, A:Y.154, A:Y.300

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Montanari, R. et al., Insights into PPAR gamma Phosphorylation and Its Inhibition Mechanism. J.Med.Chem. (2020)

Release Date

2020-02-26

Peptides

Peroxisome proliferator-activated receptor gamma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor gamma

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