SMTL ID : 6f3h.1 (1 other biounit)

Crystal structure of Dss1 exoribonuclease active site mutant D477N from Candida glabrata

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x A- G- A- U- A- C: RNA (5'-R(P*AP*GP*AP*UP*AP*C)-3')(Non-covalent)

A-G-A-U-A-C.1: 33 residues within 4Å: Chain A: N.79, T.238, D.401, A.405, H.406, E.407, I.408, N.409, D.410, Y.462, Y.527, F.572, N.577, Q.599, S.609, M.612, I.613, R.633, Y.635, S.670, L.673, S.674, S.675, S.676, H.685, M.687, I.688, Y.693, T.697, S.698, R.701, R.702 Ligands: MG.2 Protein-ligand interaction information (PLIP) not available

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: I.400, D.401, D.410 Ligands: A-G-A-U-A-C.1, A-G-A-U-A-C.1 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.401, A:D.401, A:D.410, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Razew, M. et al., Structural analysis of mtEXO mitochondrial RNA degradosome reveals tight coupling of nuclease and helicase components. Nat Commun (2018)

Release Date

2018-01-17

Peptides

Exoribonuclease II, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Exoribonuclease II, mitochondrial

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