SMTL ID : 6f3h.2 (1 other biounit)

Crystal structure of Dss1 exoribonuclease active site mutant D477N from Candida glabrata

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x C- A- C- U- G- A: RNA (5'-R(P*CP*AP*CP*UP*GP*A)-3')(Non-covalent)

C-A-C-U-G-A.1: 34 residues within 4Å: Chain A: N.79, T.238, D.401, D.404, A.405, H.406, E.407, N.409, D.410, Y.462, Y.527, F.572, F.576, N.577, Q.599, S.609, M.612, I.613, R.633, Y.635, S.670, S.674, S.675, S.676, H.685, M.687, I.688, Y.693, T.697, S.698, R.701, R.702, R.790 Ligands: MG.2 Protein-ligand interaction information (PLIP) not available

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: D.401, D.410 Ligands: C-A-C-U-G-A.1, C-A-C-U-G-A.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.401, A:D.401, A:D.410, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Razew, M. et al., Structural analysis of mtEXO mitochondrial RNA degradosome reveals tight coupling of nuclease and helicase components. Nat Commun (2018)

Release Date

2018-01-17

Peptides

Exoribonuclease II, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Exoribonuclease II, mitochondrial

Related Entries With Identical Sequence