SMTL ID : 6f3k.1

Combined solid-state NMR, solution-state NMR and EM data for structure determination of the tetrahedral aminopeptidase TET2 from P. horikoshii

Coordinates

PDB Format

Method

SOLID-STATE NMR

Oligo State

homo-12-mer

Ligands

24 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.68, D.182, E.213, D.235, V.236 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.68, A:D.182, A:D.235, A:D.235 ZN.2: 5 residues within 4Å: Chain A: H.68, D.182, E.213, R.320, H.323 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.182, A:E.213, A:E.213, A:H.323 ZN.3: 5 residues within 4Å: Chain B: H.68, D.182, E.213, D.235, V.236 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.68, B:D.182, B:D.235, B:D.235 ZN.4: 5 residues within 4Å: Chain B: H.68, D.182, E.213, R.320, H.323 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.182, B:E.213, B:E.213, B:H.323 ZN.5: 5 residues within 4Å: Chain C: H.68, D.182, E.213, D.235, V.236 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:H.68, C:D.182, C:D.235, C:D.235 ZN.6: 5 residues within 4Å: Chain C: H.68, D.182, E.213, R.320, H.323 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:D.182, C:E.213, C:E.213, C:H.323 ZN.7: 5 residues within 4Å: Chain D: H.68, D.182, E.213, D.235, V.236 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:H.68, D:D.182, D:D.235, D:D.235 ZN.8: 5 residues within 4Å: Chain D: H.68, D.182, E.213, R.320, H.323 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:D.182, D:E.213, D:E.213, D:H.323 ZN.9: 5 residues within 4Å: Chain E: H.68, D.182, E.213, D.235, V.236 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:H.68, E:D.182, E:D.235, E:D.235 ZN.10: 5 residues within 4Å: Chain E: H.68, D.182, E.213, R.320, H.323 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:D.182, E:E.213, E:E.213, E:H.323 ZN.11: 5 residues within 4Å: Chain F: H.68, D.182, E.213, D.235, V.236 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:H.68, F:D.182, F:D.235, F:D.235 ZN.12: 5 residues within 4Å: Chain F: H.68, D.182, E.213, R.320, H.323 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:D.182, F:E.213, F:E.213, F:H.323 ZN.13: 5 residues within 4Å: Chain G: H.68, D.182, E.213, D.235, V.236 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:H.68, G:D.182, G:D.235, G:D.235 ZN.14: 5 residues within 4Å: Chain G: H.68, D.182, E.213, R.320, H.323 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:D.182, G:E.213, G:E.213, G:H.323 ZN.15: 5 residues within 4Å: Chain H: H.68, D.182, E.213, D.235, V.236 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:H.68, H:D.182, H:D.235, H:D.235 ZN.16: 5 residues within 4Å: Chain H: H.68, D.182, E.213, R.320, H.323 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:D.182, H:E.213, H:E.213, H:H.323 ZN.17: 5 residues within 4Å: Chain I: H.68, D.182, E.213, D.235, V.236 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:H.68, I:D.182, I:D.235, I:D.235 ZN.18: 5 residues within 4Å: Chain I: H.68, D.182, E.213, R.320, H.323 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:D.182, I:E.213, I:E.213, I:H.323 ZN.19: 5 residues within 4Å: Chain J: H.68, D.182, E.213, D.235, V.236 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:H.68, J:D.182, J:D.235, J:D.235 ZN.20: 5 residues within 4Å: Chain J: H.68, D.182, E.213, R.320, H.323 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:D.182, J:E.213, J:E.213, J:H.323 ZN.21: 5 residues within 4Å: Chain K: H.68, D.182, E.213, D.235, V.236 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:H.68, K:D.182, K:D.235, K:D.235 ZN.22: 5 residues within 4Å: Chain K: H.68, D.182, E.213, R.320, H.323 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:D.182, K:E.213, K:E.213, K:H.323 ZN.23: 5 residues within 4Å: Chain L: H.68, D.182, E.213, D.235, V.236 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:H.68, L:D.182, L:D.235, L:D.235 ZN.24: 5 residues within 4Å: Chain L: H.68, D.182, E.213, R.320, H.323 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:D.182, L:E.213, L:E.213, L:H.323

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gauto, D.F. et al., Integrated NMR and cryo-EM atomic-resolution structure determination of a half-megadalton enzyme complex. Nat Commun (2019)

Release Date

2018-03-14

Peptides

Tetrahedral aminopeptidase: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

I
A

J
A

K
A

L
A

Tetrahedral aminopeptidase

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