SMTL ID : 6f5m.2 (1 other biounit)

Crystal structure of highly glycosylated human leukocyte elastase in complex with a thiazolidinedione inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA- MAN- MAN- FUC: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-FUC.1: 7 residues within 4Å: Chain A: W.12, Q.121, N.144, V.178, C.179, N.180, G.181 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:W.12, A:V.178 Hydrogen bonds: A:Q.121, A:N.180, A:G.181

1 x NAG- NAG- BMA- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-FUC.2: 7 residues within 4Å: Chain A: R.49, A.50, V.51, R.52, V.69, A.71, N.95 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:R.52, A:A.71, A:V.69 Hydrogen bonds: A:R.52

1 x CQH: 5-[[4-[[(2~{S})-4-methyl-1-oxidanylidene-1-[(2-propylphenyl)amino]pentan-2-yl]carbamoyl]phenyl]methyl]-2-oxidanylidene-1,3-thiazol-1-ium-4-olate(Non-covalent)

CQH.3: 7 residues within 4Å: Chain A: L.20, V.43, A.44, N.45, V.46, N.47, V.48 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.20, A:L.20, A:N.47 Hydrogen bonds: A:N.45, A:V.46, A:N.47

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 6 residues within 4Å: Chain A: R.6, L.130, A.137, S.138, V.139, Q.141 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.138, A:V.139, A:Q.141 Salt bridges: A:R.6 SO4.5: 2 residues within 4Å: Chain A: R.21, R.52 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.21, A:R.52

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.6: 1 residues within 4Å: Chain A: F.25 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hochscherf, J. et al., Crystal structure of highly glycosylated human leukocyte elastase in complex with an S2' site binding inhibitor. Acta Crystallogr F Struct Biol Commun (2018)

Release Date

2018-08-08

Peptides

Neutrophil elastase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Neutrophil elastase

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