SMTL ID : 9atu.2 (5 other biounits)

Bifunctional Inhibition of Neutrophil Elastase by Eap4 from S. aureus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

hetero-4-2-mer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 5 residues within 4Å: Chain A: R.52, V.69, A.71, N.95 Chain F: R.8 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:R.8, F:R.8, F:R.8

5 x NAG- NAG- BMA- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-FUC.2: 7 residues within 4Å: Chain A: Q.121, C.122, N.144, V.178, C.179, N.180, G.181 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Q.121 Hydrogen bonds: A:V.178, A:N.180, A:G.181 NAG-NAG-BMA-FUC.3: 5 residues within 4Å: Chain B: R.52, V.69, F.70, A.71, N.95 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:V.69 Hydrogen bonds: B:R.52, B:R.52 NAG-NAG-BMA-FUC.4: 8 residues within 4Å: Chain B: W.12, Q.121, C.122, N.144, V.178, C.179, N.180, G.181 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:Q.121 Hydrogen bonds: B:V.178, B:N.180, B:G.181 NAG-NAG-BMA-FUC.5: 6 residues within 4Å: Chain D: R.49, V.51, R.52, V.69, A.71, N.95 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:V.69, D:R.52 Water bridges: D:V.69 Hydrogen bonds: D:R.52 NAG-NAG-BMA-FUC.8: 9 residues within 4Å: Chain A: G.22 Chain F: W.12, Q.121, C.122, N.144, V.178, C.179, N.180, G.181 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain F Hydrogen bonds: A:R.67, F:V.178, F:N.180, F:G.181

2 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.6: 7 residues within 4Å: Chain D: Q.121, C.122, N.144, V.178, C.179, N.180, G.181 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:V.178, D:N.180, D:G.181 NAG-NAG-FUC.7: 4 residues within 4Å: Chain F: R.52, V.69, A.71, N.95 2 PLIP interactions: 2 interactions with chain F Hydrophobic interactions: F:V.69 Hydrogen bonds: F:R.52, F:R.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mishra, N.B. et al., Bifunctional Inhibition of Neutrophil Elastase by Eap4 from S. aureus. To Be Published

Release Date

2024-06-12

Peptides

Neutrophil elastase: ABDF
Extracellular Adherence Protein: CE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
F

D
A

F
C

C
E

E
B

Neutrophil elastase

Extracellular Adherence Protein

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