SMTL ID : 6f6t.1

Phenylalanine ammonia-lyase (PAL) from Petroselinum crispum complexed with S-APPA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-tetramer

Ligands

4 x CV2: (S)-(1-amino-2phenylallyl)phosphonic acid(Covalent)

CV2.1: 18 residues within 4Å: Chain A: Y.110, F.116, G.117, L.134, F.137, X.202, L.204, L.254, N.258, N.382, F.398, E.482, N.485, Q.486 Chain B: K.454 Chain D: Q.346, Y.349, R.352 15 PLIP interactions: 9 interactions with chain A, 5 interactions with chain D, 1 interactions with chain B Hydrophobic interactions: A:F.116, A:L.134, A:F.137, A:L.204, A:L.254, B:K.454 Hydrogen bonds: A:N.258, A:N.382, D:Q.346, D:Y.349, D:Y.349, D:R.352, D:R.352 Water bridges: A:G.117, A:G.117 CV2.2: 18 residues within 4Å: Chain A: K.454 Chain B: Y.110, F.116, G.117, L.134, F.137, X.202, L.204, L.254, N.258, N.382, F.398, E.482, N.485, Q.486 Chain C: Q.346, Y.349, R.352 14 PLIP interactions: 8 interactions with chain B, 5 interactions with chain C, 1 interactions with chain A Hydrophobic interactions: B:F.116, B:L.134, B:F.137, B:L.204, B:L.254, A:K.454 Hydrogen bonds: B:N.258, B:N.382, C:Q.346, C:Y.349, C:Y.349, C:R.352, C:R.352 Water bridges: B:G.117 CV2.3: 18 residues within 4Å: Chain B: Q.346, Y.349, R.352 Chain C: Y.110, F.116, G.117, L.134, F.137, X.202, L.204, L.254, N.258, N.382, F.398, E.482, N.485, Q.486 Chain D: K.454 14 PLIP interactions: 4 interactions with chain B, 9 interactions with chain C, 1 interactions with chain D Hydrogen bonds: B:Q.346, B:Y.349, B:R.352, B:R.352, C:N.258, C:N.382 Hydrophobic interactions: C:F.116, C:L.134, C:F.137, C:L.204, C:L.254, D:K.454 Water bridges: C:G.117, C:G.117 CV2.4: 18 residues within 4Å: Chain A: Q.346, Y.349, R.352 Chain C: K.454 Chain D: Y.110, F.116, G.117, L.134, F.137, X.202, L.204, L.254, N.258, N.382, F.398, E.482, N.485, Q.486 15 PLIP interactions: 8 interactions with chain D, 6 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: D:F.116, D:L.134, D:F.137, D:L.204, D:L.254, C:K.454 Hydrogen bonds: D:N.258, D:N.382, A:Q.346, A:Y.349, A:Y.349, A:Y.349, A:R.352, A:R.352 Water bridges: D:G.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bata, Z. et al., Substrate Tunnel Engineering Aided by X-ray Crystallography and Functional Dynamics Swaps the Function of MIO-Enzymes. Acs Catalysis (2021)

Release Date

2019-06-26

Peptides

Phenylalanine ammonia-lyase 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Phenylalanine ammonia-lyase 1

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