SMTL ID : 6f9h.1

Crystal structure of Barley Beta-Amylase complexed with 4-S-alpha-D-glucopyranosyl-(1,4-dideoxy-4-thio-nojirimycin)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x SGJ: 1,4-dideoxy-4-thio-nojirimycin(Non-covalent)

SGJ.1: 10 residues within 4Å: Chain A: M.15, V.97, A.182, E.184, K.293, T.340, E.378, A.380, L.417 Ligands: GLC.2 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:V.97, A:E.184, A:K.293, A:T.340, A:E.378, A:A.380 Water bridges: A:R.418

1 x GLC: alpha-D-glucopyranose(Non-covalent)

GLC.2: 12 residues within 4Å: Chain A: M.15, L.18, D.51, W.53, I.87, H.91, N.96, D.99, A.182, K.293, R.418 Ligands: SGJ.1 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:H.91, A:D.99, A:R.418, A:R.418 Water bridges: A:L.16, A:D.51, A:G.94, A:G.94, A:V.97, A:V.97, A:D.99

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 2 residues within 4Å: Chain A: R.324, L.475 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Moncayo, M.A. et al., Synthesis, biological and structural analysis of prospective glycosyl-iminosugar prodrugs: impact on germination. To be published

Release Date

2019-01-30

Peptides

Beta-amylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-amylase

Related Entries With Identical Sequence