SMTL ID : 6f9j.1

Crystal structure of Barley Beta-Amylase complexed with 4-O-alpha-D-mannopyranosyl-(1-deoxynojirimycin)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.67 Å

Oligo State

monomer

Ligands

1 x NOJ: 1-DEOXYNOJIRIMYCIN(Non-covalent)

NOJ.1: 9 residues within 4Å: Chain A: M.15, A.182, E.184, K.293, T.340, E.378, A.380, L.417 Ligands: MAN.2 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:E.184, A:K.293, A:K.293, A:A.380 Water bridges: A:E.184, A:T.340, A:A.380, A:R.418

1 x MAN: alpha-D-mannopyranose(Non-covalent)

MAN.2: 9 residues within 4Å: Chain A: M.15, L.18, D.51, W.53, I.87, H.91, A.182, R.418 Ligands: NOJ.1 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:H.91, A:R.418, A:R.418 Water bridges: A:L.16, A:D.51, A:Q.92, A:A.182

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 2 residues within 4Å: Chain A: R.324, L.475 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Moncayo, M.A. et al., Synthesis, biological and structural analysis of prospective glycosyl-iminosugar prodrugs: impact on germination. To be published

Release Date

2019-01-30

Peptides

Beta-amylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-amylase

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