SMTL ID : 6fa5.1

CRYSTAL STRUCTURE OF THE DEAH-BOX HELICASE PRP2 IN COMPLEX WITH ADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 15 residues within 4Å: Chain A: L.14, E.38, T.39, G.40, S.41, G.42, K.43, T.44, T.45, S.75, R.79, F.275, T.297, R.345 Ligands: MG.2 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:E.38, A:G.40, A:S.41, A:G.42, A:K.43, A:T.44, A:T.44, A:T.45, A:S.75, A:R.79, A:R.345, A:R.345 Water bridges: A:K.43, A:D.135 Salt bridges: A:K.43

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: T.44, E.136, S.295 Ligands: ADP.1 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.44, H2O.1, H2O.1, H2O.1, H2O.1

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 2 residues within 4Å: Chain A: A.54, Y.56 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schmitt, A. et al., Crystal structure of the spliceosomal DEAH-box ATPase Prp2. Acta Crystallogr D Struct Biol (2018)

Release Date

2018-07-11

Peptides

Putative mRNA splicing factor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative mRNA splicing factor

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