SMTL ID : 6rmb.1

Crystal structure of the DEAH-box ATPase Prp2 in complex with Spp2 and ADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 15 residues within 4Å: Chain A: L.14, E.38, T.39, G.40, S.41, G.42, K.43, T.44, T.45, S.75, R.79, F.275, T.297, D.299 Ligands: MG.2 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:G.40, A:S.41, A:G.42, A:K.43, A:T.44, A:T.45, A:T.45, A:S.75, A:R.79, A:T.297 Water bridges: A:K.43, A:T.44, A:E.136 Salt bridges: A:K.43 pi-Stacking: A:F.275

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: T.44, D.135, E.136, S.295 Ligands: ADP.1 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.44, H2O.1, H2O.1, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hamann, F. et al., Structural analysis of the intrinsically disordered splicing factor Spp2 and its binding to the DEAH-box ATPase Prp2. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2020-02-05

Peptides

Putative mRNA splicing factor: A
Putative pre-mRNA splicing protein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

Putative mRNA splicing factor

Putative pre-mRNA splicing protein

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