SMTL ID : 6fac.1

CRYSTAL STRUCTURE OF THE DEAH-BOX HELICASE PRP2 IN COMPLEX WITH ADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 14 residues within 4Å: Chain A: E.55, T.56, G.57, S.58, G.59, K.60, T.61, T.62, S.92, R.96, F.292, T.314, D.316 Ligands: MG.2 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:G.57, A:S.58, A:G.59, A:K.60, A:T.61, A:T.61, A:T.62, A:T.62, A:S.92, A:T.314, A:D.316 Water bridges: A:T.56, A:K.60, A:T.61, A:R.96, A:E.153, A:E.153, A:T.311 Salt bridges: A:K.60 pi-Stacking: A:F.292

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: T.61, D.152, E.153, S.312 Ligands: ADP.1 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.61, H2O.1, H2O.2, H2O.3, H2O.4

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 5 residues within 4Å: Chain A: R.86, R.87, V.88, S.281, I.308 Ligand excluded by PLIP CL.4: 1 residues within 4Å: Chain A: A.35 Ligand excluded by PLIP CL.5: 4 residues within 4Å: Chain A: M.429, E.455, P.456, M.457 Ligand excluded by PLIP CL.6: 1 residues within 4Å: Chain A: A.71 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schmitt, A. et al., Crystal structure of the spliceosomal DEAH-box ATPase Prp2. Acta Crystallogr D Struct Biol (2018)

Release Date

2018-07-11

Peptides

Putative mRNA splicing factor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative mRNA splicing factor

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