SMTL ID : 6fbq.1

Crystal Structure of the Human Retinoid X Receptor DNA-Binding Domain Bound to the Human MEp DR1 Response Element, pH 7.0

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 8 residues within 4Å: Chain A: C.10, I.12, C.13, D.15, C.27, C.30, R.59, R.66 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.10, A:C.13, A:C.27, A:C.30 ZN.2: 7 residues within 4Å: Chain A: C.46, K.50, C.52, C.62, Y.64, C.65 Chain B: Q.85 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.46, A:C.52, A:C.62, A:C.65 ZN.4: 8 residues within 4Å: Chain B: C.10, I.12, C.13, D.15, C.27, C.30, R.59, R.66 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.10, B:C.13, B:C.27, B:C.30 ZN.5: 7 residues within 4Å: Chain B: C.46, K.50, D.51, C.52, C.62, Y.64, C.65 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.46, B:C.52, B:C.62, B:C.65

1 x MPO: 3[N-MORPHOLINO]PROPANE SULFONIC ACID(Non-covalent)

MPO.3: 6 residues within 4Å: Chain A: A.11, K.20, V.24, Y.25, M.73, G.74 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.25 Salt bridges: A:K.20

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Osz, J. et al., Modulation of RXR-DNA complex assembly by DNA context. Mol. Cell. Endocrinol. (2019)

Release Date

2018-12-05

Peptides

Retinoic acid receptor RXR-alpha: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Retinoic acid receptor RXR-alpha

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