SMTL ID : 6fdu.2 (1 other biounit)

Structure of Chlamydia trachomatis effector protein Cdu1 bound to Compound 3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x D5W: (2~{S},3~{S})-2-[[(2~{S})-2-[3,5-bis(chloranyl)phenyl]-2-(dimethylamino)ethanoyl]amino]-~{N}-[[2-(iminomethyl)pyrimidin-4-yl]methyl]-3-methyl-pentanamide(Covalent)

D5W.1: 16 residues within 4Å: Chain A: A.30, D.32, S.33, W.112, M.127, L.130, A.131, V.136, S.139, H.140, W.141, Q.203, G.207, S.208, S.209, C.210 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:D.32, A:A.131 Hydrogen bonds: A:S.33, A:S.139, A:Q.203, A:G.207, A:C.210 Water bridges: A:D.34, A:G.211

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 6 residues within 4Å: Chain A: H.44, P.48, L.50, I.51, H.100, T.104 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ramirez, Y.A. et al., Structural Basis of Substrate Recognition and Covalent Inhibition of Cdu1 from Chlamydia trachomatis. ChemMedChem (2018)

Release Date

2018-08-15

Peptides

Deubiquitinase and deneddylase Dub1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Deubiquitinase and deneddylase Dub1

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