SMTL ID : 6fh1.1

Protein arginine kinase McsB in the apo state

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 5 residues within 4Å: Chain A: S.30, R.32, S.182, V.183, M.184 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.30 Water bridges: A:R.32 FMT.2: 3 residues within 4Å: Chain A: E.125, C.171, P.172 No protein-ligand interaction detected (PLIP)

17 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 4 residues within 4Å: Chain A: R.34, E.125, R.129, R.180 Ligand excluded by PLIP EDO.4: 4 residues within 4Å: Chain A: T.12, A.13, V.14, E.318 Ligand excluded by PLIP EDO.5: 5 residues within 4Å: Chain A: K.273, R.276, S.277, I.280, C.295 Ligand excluded by PLIP EDO.6: 7 residues within 4Å: Chain A: F.48, A.53, S.105, P.106, F.107, G.108, N.123 Ligand excluded by PLIP EDO.7: 4 residues within 4Å: Chain A: L.143, S.147, D.150, E.237 Ligand excluded by PLIP EDO.8: 6 residues within 4Å: Chain A: V.92, E.93, H.95, Y.214, I.321, Q.324 Ligand excluded by PLIP EDO.9: 8 residues within 4Å: Chain A: R.211, G.212, T.213, Y.214, G.215, E.216, G.217, E.219 Ligand excluded by PLIP EDO.10: 7 residues within 4Å: Chain A: V.14, S.15, M.18, K.94, L.96, E.116, L.133 Ligand excluded by PLIP EDO.11: 2 residues within 4Å: Chain A: A.261, K.264 Ligand excluded by PLIP EDO.12: 3 residues within 4Å: Chain A: V.14, A.16, S.19 Ligand excluded by PLIP EDO.13: 5 residues within 4Å: Chain A: W.17, Q.20, F.134, P.135, Q.138 Ligand excluded by PLIP EDO.14: 4 residues within 4Å: Chain A: H.95, Y.214, N.317, I.321 Ligand excluded by PLIP EDO.15: 4 residues within 4Å: Chain A: Y.69, G.70, E.71, A.72 Ligand excluded by PLIP EDO.16: 2 residues within 4Å: Chain A: L.322, Y.331 Ligand excluded by PLIP EDO.17: 3 residues within 4Å: Chain A: A.140, L.143, E.144 Ligand excluded by PLIP EDO.19: 6 residues within 4Å: Chain B: S.289, A.292, A.293, M.320, T.323, Q.324 Ligand excluded by PLIP EDO.20: 5 residues within 4Å: Chain B: H.95, M.184, Y.214, N.317, I.321 Ligand excluded by PLIP

4 x IMD: IMIDAZOLE(Non-covalent)

IMD.18: 2 residues within 4Å: Chain A: E.154, Y.167 1 PLIP interactions: 1 interactions with chain A pi-Stacking: A:F.161 IMD.21: 7 residues within 4Å: Chain B: S.30, R.32, L.133, S.182, V.183, M.184, Q.226 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.30, B:S.182 IMD.22: 3 residues within 4Å: Chain B: L.322, F.327, Y.331 No protein-ligand interaction detected (PLIP) IMD.23: 4 residues within 4Å: Chain B: R.37, S.147, D.150, D.151 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.37, B:D.150, B:D.150

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Suskiewicz, M.J. et al., Structure of McsB, a protein kinase for regulated arginine phosphorylation. Nat.Chem.Biol. (2019)

Release Date

2019-02-06

Peptides

Protein-arginine kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein-arginine kinase

Related Entries With Identical Sequence