SMTL ID : 6flm.1 (2 other biounits)

Crystal structure of the human TRIM25 PRYSPRY domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.01 Å

Oligo State

monomer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: K.171, F.172, R.173 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.173 Water bridges: A:R.173 Salt bridges: A:K.171, A:R.173 SO4.2: 4 residues within 4Å: Chain A: A.163, D.164, K.165, H.167 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.164, A:D.164, A:K.165 Salt bridges: A:H.167 SO4.3: 5 residues within 4Å: Chain A: A.40, A.51, E.52, M.53, Q.55 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.52, A:M.53, A:M.53, A:Q.55 SO4.4: 4 residues within 4Å: Chain A: T.65, Y.66, Q.105, G.106 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.65, A:G.106 SO4.5: 3 residues within 4Å: Chain A: S.42, E.43, C.44 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.43, A:C.44 Water bridges: A:Y.45 SO4.6: 5 residues within 4Å: Chain A: R.18, R.145, C.196, S.197, P.198 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.18, A:S.197 Salt bridges: A:R.145

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Koliopoulos, M.G. et al., Molecular mechanism of influenza A NS1-mediated TRIM25 recognition and inhibition. Nat Commun (2018)

Release Date

2018-05-23

Peptides

E3 ubiquitin/ISG15 ligase TRIM25: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E3 ubiquitin/ISG15 ligase TRIM25

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