SMTL ID : 6flm.3 (2 other biounits)

Crystal structure of the human TRIM25 PRYSPRY domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.01 Å

Oligo State

monomer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: T.65, Y.66, Q.105, G.106 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.65, A:T.65, A:G.106 SO4.2: 3 residues within 4Å: Chain A: K.171, F.172, R.173 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.173 Water bridges: A:K.171 Salt bridges: A:K.171, A:R.173 SO4.3: 4 residues within 4Å: Chain A: A.51, E.52, M.53, Q.55 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.52, A:M.53, A:Q.55 Water bridges: A:Q.55 SO4.4: 3 residues within 4Å: Chain A: R.18, P.198, K.199 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.199 Water bridges: A:R.145 Salt bridges: A:R.18 SO4.5: 4 residues within 4Å: Chain A: A.163, D.164, K.165, H.167 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.164, A:K.165 Salt bridges: A:H.167

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 5 residues within 4Å: Chain A: C.67, S.68, R.110, W.185, F.187 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Koliopoulos, M.G. et al., Molecular mechanism of influenza A NS1-mediated TRIM25 recognition and inhibition. Nat Commun (2018)

Release Date

2018-05-23

Peptides

E3 ubiquitin/ISG15 ligase TRIM25: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

E3 ubiquitin/ISG15 ligase TRIM25

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