SMTL ID : 6fnk.1

Crystal Structure of Ephrin B4 (EphB4) Receptor Protein Kinase with a pyrazolo[3,4-d]pyrimidine fragment of NVP-BHG712

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.05 Å

Oligo State

monomer

Ligands

1 x DXK: 1-methyl-6-pyridin-3-yl-pyrazolo[3,4-d]pyrimidin-4-amine(Non-covalent)

DXK.1: 11 residues within 4Å: Chain A: I.26, A.28, G.29, V.34, A.50, K.52, T.98, E.99, F.100, M.101, L.152 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.34, A:A.50, A:L.152 Hydrogen bonds: A:T.98, A:T.98, A:M.101 Water bridges: A:S.162, A:S.162

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: D.260, Q.263, A.268, R.269, P.270, Q.274 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.263, A:Q.274 Water bridges: A:D.260, A:D.260, A:A.268, A:R.269 EDO.3: 2 residues within 4Å: Chain A: R.134, P.273 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.134

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Troster, A. et al., NVP-BHG712: Effects of Regioisomers on the Affinity and Selectivity toward the EPHrin Family. ChemMedChem (2018)

Release Date

2018-08-08

Peptides

Ephrin type-B receptor 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ephrin type-B receptor 4

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