SMTL ID : 6g2a.1

Human [protein ADP-ribosylargenine] hydrolase ARH1 in complex with ADP-HPM

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x A3R: Adenosine Diphosphate (Hydroxymethyl)pyrrolidine monoalcohol(Non-covalent)

A3R.1: 25 residues within 4Å: Chain A: D.65, D.66, A.108, G.110, G.111, A.112, S.113, S.134, H.135, E.136, G.137, G.138, C.139, G.140, H.173, H.175, T.177, Y.273, S.274, S.279, S.280, D.312, D.314, S.315 Ligands: MG.2 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:D.65, A:G.110, A:G.111, A:A.112, A:S.113, A:S.113, A:S.113, A:S.134, A:G.137, A:G.140, A:S.274, A:S.315, A:S.315 Water bridges: A:S.64, A:G.138, A:G.138, A:T.177 Salt bridges: A:H.173 pi-Stacking: A:Y.273

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: S.64, D.65, D.66, D.314 Ligands: A3R.1 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:S.64, A:D.65, A:D.66, A:D.314, H2O.2 MG.3: 1 residues within 4Å: Chain A: D.105 No protein-ligand interaction detected (PLIP)

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 4 residues within 4Å: Chain A: L.47, G.52, L.53, H.304 Ligand excluded by PLIP

3 x ACT: ACETATE ION(Non-functional Binders)

ACT.5: 2 residues within 4Å: Chain A: H.44, L.47 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:H.44, A:H.304 ACT.6: 4 residues within 4Å: Chain A: E.35, W.276, G.311, D.312 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:W.276 Water bridges: A:E.35 ACT.7: 7 residues within 4Å: Chain A: D.265, T.269, G.275, W.276, G.277, G.310, G.311 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:D.265 Hydrogen bonds: A:G.277

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rack, J.G.M. et al., (ADP-ribosyl)hydrolases: Structural Basis for Differential Substrate Recognition and Inhibition. Cell Chem Biol (2018)

Release Date

2018-11-28

Peptides

[Protein ADP-ribosylarginine] hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

[Protein ADP-ribosylarginine] hydrolase

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