SMTL ID : 6g3y.3 (2 other biounits)

Structure of the mouse 8-oxoguanine DNA Glycosylase mOGG1 in complex with ligand TH5675

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.51 Å

Oligo State

monomer

Ligands

1 x ELB: 4-(4-azanyl-2-oxidanylidene-3~{H}-benzimidazol-1-yl)-~{N}-(4-iodophenyl)piperidine-1-carboxamide(Non-covalent)

ELB.1: 16 residues within 4Å: Chain A: G.35, F.137, N.144, I.145, K.242, C.246, L.249, M.250, P.259, H.263, G.305, Q.308, A.309, F.312, D.315, L.316 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:I.145, A:P.259, A:H.263, A:F.312 Hydrogen bonds: A:G.35, A:I.145, A:K.242, A:D.315 pi-Stacking: A:H.263, A:F.312 pi-Cation interactions: A:H.263 Halogen bonds: A:G.305

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Visnes, T. et al., Small-molecule inhibitor of OGG1 suppresses proinflammatory gene expression and inflammation. Science (2018)

Release Date

2018-11-28

Peptides

N-glycosylase/DNA lyase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

N-glycosylase/DNA lyase

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