SMTL ID : 8bq7.1 (2 other biounits)

Structure of the mouse 8-oxoguanine DNA Glycosylase mOGG1 in complex with ligand TH2829

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x R4U: ~{N}4-cyclohexyl-2~{H}-pyrazolo[3,4-d]pyrimidine-4,6-diamine(Non-covalent)

R4U.1: 13 residues within 4Å: Chain A: S.34, G.35, Q.36, F.38, F.137, I.148, K.242, M.250, P.259, D.261, Q.308, A.309, F.312 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Q.36, A:P.259, A:A.309, A:F.312, A:F.312 Hydrogen bonds: A:K.242, A:D.261 pi-Cation interactions: A:K.242

1 x NI: NICKEL (II) ION(Non-covalent)

NI.2: 2 residues within 4Å: Chain A: H.269, H.275 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.269, A:H.275

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Scaletti, E. et al., Structure of the mouse 8-oxoguanine DNA Glycosylase mOGG1 in complex with ligand TH2829. To Be Published

Release Date

2023-11-29

Peptides

N-glycosylase/DNA lyase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

N-glycosylase/DNA lyase

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