SMTL ID : 6g4d.1

Crystal structure of the omega TRANSAMINASE FROM PSEUDOMONAS Jessenii in complex with PLP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-dimer

Ligands

2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)

PLP.1: 15 residues within 4Å: Chain A: S.117, G.118, S.119, N.122, Y.151, H.152, G.153, E.225, D.258, V.260, I.261, K.287 Chain B: F.323, T.324 Ligands: GOL.3 18 PLIP interactions: 15 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:Y.151, A:E.225, A:V.260, A:V.260, A:K.287 Hydrogen bonds: A:G.118, A:S.119, A:S.119, A:N.122, B:T.324, B:T.324 Water bridges: A:Y.151, A:E.225, A:S.286, A:S.286, B:G.325 Salt bridges: A:K.287 pi-Stacking: A:Y.151 PLP.4: 14 residues within 4Å: Chain A: F.323, T.324 Chain B: S.117, G.118, S.119, N.122, Y.151, H.152, G.153, E.225, D.258, V.260, I.261, K.287 17 PLIP interactions: 14 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:Y.151, B:E.225, B:V.260, B:V.260, B:K.287 Hydrogen bonds: B:S.117, B:G.118, B:S.119, B:N.122, A:T.324, A:T.324 Water bridges: B:E.225, B:S.286, B:S.286, A:G.325 Salt bridges: B:K.287 pi-Stacking: B:Y.151

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: Q.168, G.170, F.171, D.172, L.173 Chain B: N.134 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:Q.168, A:G.170, A:D.172, A:L.173, A:L.173, B:N.134 GOL.3: 6 residues within 4Å: Chain A: W.58, Y.151, A.230, K.287, R.417 Ligands: PLP.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.151, A:K.287, A:K.287, A:R.417

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Palacio, C.M. et al., Biochemical properties of a Pseudomonas aminotransferase involved in caprolactam metabolism. Febs J. (2019)

Release Date

2019-04-10

Peptides

Aspartate aminotransferase family protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Aspartate aminotransferase family protein

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