SMTL ID : 6g6z.1

Eg5-inhibitor complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 13 residues within 4Å: Chain A: R.26, R.28, P.29, Q.108, T.109, G.110, T.111, G.112, K.113, T.114, F.115, E.120 Ligands: MG.2 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:R.26, A:Q.108, A:G.110, A:T.111, A:G.112, A:K.113, A:T.114, A:T.114, A:T.114, A:F.115, A:E.120 Water bridges: A:K.113, A:K.113 Salt bridges: A:K.113 pi-Stacking: A:F.115, A:F.115

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: T.114 Ligands: ADP.1 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.114, H2O.1, H2O.1, H2O.1, H2O.1

1 x EOK: (~{N}~{Z})-~{N}-[(5~{S})-4-ethanoyl-5-methyl-5-phenyl-1,3,4-thiadiazolidin-2-ylidene]ethanamide(Non-covalent)

EOK.3: 12 residues within 4Å: Chain A: E.118, G.119, E.120, R.121, W.129, A.135, P.139, L.162, Y.213, L.216, E.217, R.223 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:W.129, A:A.135, A:P.139, A:L.162, A:Y.213, A:E.217 Hydrogen bonds: A:Y.213, A:L.216

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Talapatra, S.K. et al., Crystal structure of the Eg5 - K858 complex and implications for structure-based design of thiadiazole-containing inhibitors. Eur J Med Chem (2018)

Release Date

2018-08-08

Peptides

Kinesin-like protein KIF11: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Kinesin-like protein KIF11

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