SMTL ID : 6gg7.1

cyanobacterial GAPDH with full-length CP12

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.32 Å

Oligo State

hetero-4-4-mer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 23 residues within 4Å: Chain A: G.10, F.11, G.12, R.13, I.14, N.37, D.38, T.39, D.82, R.83, A.101, T.102, G.103, F.105, T.125, A.126, C.156, N.319, Y.323 Chain B: D.68, Y.75, D.76 Chain D: E.71 23 PLIP interactions: 20 interactions with chain A, 1 interactions with chain D, 2 interactions with chain B Hydrophobic interactions: A:I.14, A:Y.323 Hydrogen bonds: A:F.11, A:F.11, A:R.13, A:I.14, A:N.37, A:D.38, A:T.39, A:R.83, A:N.319, D:E.71, B:D.76 Water bridges: A:N.9, A:N.9, A:G.12, A:G.15, A:R.83, A:G.103, A:T.125, A:G.187, B:I.74 pi-Cation interactions: A:R.83 NAD.2: 23 residues within 4Å: Chain B: E.71 Chain C: G.10, F.11, G.12, R.13, I.14, N.37, D.38, T.39, D.82, R.83, A.101, T.102, G.103, F.105, T.125, A.126, C.156, T.186, N.319, Y.323 Chain D: D.68, Y.75 27 PLIP interactions: 22 interactions with chain C, 3 interactions with chain D, 2 interactions with chain B Hydrophobic interactions: C:I.14, C:Y.323 Hydrogen bonds: C:F.11, C:F.11, C:R.13, C:I.14, C:N.37, C:D.38, C:T.39, C:R.83, C:T.125, C:N.319, D:D.76, B:E.71, B:E.71 Water bridges: C:N.9, C:N.9, C:G.12, C:G.15, C:T.39, C:T.39, C:R.83, C:G.103, C:T.125, C:G.187, D:I.74, D:D.77 NAD.3: 23 residues within 4Å: Chain E: G.10, F.11, G.12, R.13, I.14, N.37, D.38, T.39, D.82, R.83, A.101, T.102, G.103, F.105, T.125, A.126, C.156, N.319, Y.323 Chain F: D.68, Y.75, D.76 Chain H: E.71 26 PLIP interactions: 20 interactions with chain E, 2 interactions with chain H, 4 interactions with chain F Hydrophobic interactions: E:I.14, E:Y.323 Hydrogen bonds: E:F.11, E:F.11, E:R.13, E:I.14, E:N.37, E:T.39, E:R.83, E:T.125, E:N.319, H:E.71, H:E.71, F:Y.75, F:D.76 Water bridges: E:N.9, E:N.9, E:G.12, E:G.15, E:R.83, E:G.103, E:T.125, E:G.187, F:I.74, F:D.77 pi-Cation interactions: E:R.83 NAD.4: 23 residues within 4Å: Chain F: E.71 Chain G: G.10, F.11, G.12, R.13, I.14, N.37, D.38, T.39, D.82, R.83, A.101, T.102, G.103, F.105, T.125, A.126, C.156, T.186, N.319, Y.323 Chain H: D.68, Y.75 23 PLIP interactions: 19 interactions with chain G, 1 interactions with chain F, 3 interactions with chain H Hydrophobic interactions: G:I.14, G:Y.323 Hydrogen bonds: G:F.11, G:F.11, G:R.13, G:I.14, G:N.37, G:T.39, G:T.39, G:R.83, G:N.319, F:E.71, H:Y.75, H:D.76 Water bridges: G:N.9, G:N.9, G:G.12, G:G.15, G:R.83, G:G.103, G:T.125, G:G.187, H:I.74

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McFarlane, C.R. et al., Structural basis of light-induced redox regulation in the Calvin-Benson cycle in cyanobacteria. Proc.Natl.Acad.Sci.USA (2019)

Release Date

2019-05-08

Peptides

Glyceraldehyde-3-phosphate dehydrogenase: ACEG
CP12 polypeptide: BDFH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

C
A

E
B

G
A

B
C

D
D

F
C

H
D

Glyceraldehyde-3-phosphate dehydrogenase

CP12 polypeptide

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