SMTL ID : 6gh8.1 (1 other biounit)

Crystal structure of GP1 domain of Lujo virus in complex with the first CUB domain of neuropilin-2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.44 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: N.52, T.54, R.55 Chain B: Y.107 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.52, A:R.55 Hydrophobic interactions: B:Y.107

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 4 residues within 4Å: Chain B: E.58, D.65, D.106, R.109 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.58, B:D.65, B:D.106, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cohen-Dvashi, H. et al., Structural basis for receptor recognition by Lujo virus. Nat Microbiol (2018)

Release Date

2018-07-25

Peptides

Glycoprotein: A
Neuropilin-2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
A

Glycoprotein

Neuropilin-2

Related Entries With Identical Sequence