SMTL ID : 6gh8.2 (1 other biounit)

Crystal structure of GP1 domain of Lujo virus in complex with the first CUB domain of neuropilin-2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.44 Å

Oligo State

hetero-1-1-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: N.52, T.54, R.55 Chain B: Y.107 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.52, A:R.55 Hydrophobic interactions: B:Y.107 NAG.2: 3 residues within 4Å: Chain A: Q.31, H.34, N.134 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.31

1 x CA: CALCIUM ION(Non-covalent)

CA.3: 6 residues within 4Å: Chain B: E.58, D.65, D.106, A.108, R.109, Q.110 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.58, B:D.65, B:D.65, B:D.106, B:R.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cohen-Dvashi, H. et al., Structural basis for receptor recognition by Lujo virus. Nat Microbiol (2018)

Release Date

2018-07-25

Peptides

Glycoprotein: A
Neuropilin-2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

Glycoprotein

Neuropilin-2

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