SMTL ID : 6grw.1

Glucuronoyl Esterase from Opitutus terrae (Au derivative)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

2 x AU: GOLD ION(Non-covalent)

AU.1: 7 residues within 4Å: Chain A: C.264, S.270, E.276, T.277, V.278 Ligands: AU.2, CA.3 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:C.264, A:E.276, H2O.6, H2O.12 AU.2: 7 residues within 4Å: Chain A: C.264, G.265, S.270, V.278, I.281, F.293 Ligands: AU.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.264

1 x CA: CALCIUM ION(Non-covalent)

CA.3: 5 residues within 4Å: Chain A: C.264, H.274, E.276, D.331 Ligands: AU.1 6 PLIP interactions: 2 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:H.274, A:E.276, H2O.1, H2O.2, H2O.9, H2O.12

2 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.4: 4 residues within 4Å: Chain A: A.63, A.64, L.65, G.66 No protein-ligand interaction detected (PLIP) MG.5: 1 residues within 4Å: Chain A: S.230 No protein-ligand interaction detected (PLIP)

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.6: 4 residues within 4Å: Chain A: V.12, G.13, A.14, G.16 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:V.12

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.7: 3 residues within 4Å: Chain A: R.333, D.358, V.359 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.333 Water bridges: A:R.333 EDO.8: 7 residues within 4Å: Chain A: A.128, R.129, W.130, R.142, G.173, P.177, R.179 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.128, A:W.130 Water bridges: A:G.173 EDO.9: 8 residues within 4Å: Chain A: A.255, L.256, R.317, P.318, W.396, L.397, K.398 Ligands: EDO.10 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.255, A:K.398 EDO.10: 9 residues within 4Å: Chain A: A.229, S.230, R.231, D.252, R.253, F.254, A.255, K.398 Ligands: EDO.9 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.230 EDO.11: 6 residues within 4Å: Chain A: I.98, A.101, E.102, R.103, P.225, L.226 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.101 Water bridges: A:E.102

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Arnling Baath, J. et al., Biochemical and structural features of diverse bacterial glucuronoyl esterases facilitating recalcitrant biomass conversion. Biotechnol Biofuels (2018)

Release Date

2018-08-15

Peptides

Putative acetyl xylan esterase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative acetyl xylan esterase

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