SMTL ID : 6gs0.1

Native Glucuronoyl Esterase from Opitutus terrae

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.34 Å

Oligo State

monomer

Ligands

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: A.23, T.24, H.27, R.28 No protein-ligand interaction detected (PLIP) EDO.2: 6 residues within 4Å: Chain A: T.6, L.7, L.269, K.271, R.272, L.337 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.6, A:K.271 EDO.3: 8 residues within 4Å: Chain A: F.112, Y.113, K.154, H.237, S.238, R.239, H.379 Ligands: EDO.4 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.379 Water bridges: A:Y.113, A:K.154, A:H.237, A:H.237 EDO.4: 12 residues within 4Å: Chain A: S.238, R.239, K.242, S.262, C.264, E.276, I.281, F.285, W.288, W.329, H.379 Ligands: EDO.3 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.238, A:S.238, A:K.242, A:E.276 Water bridges: A:C.264, A:W.329 EDO.5: 6 residues within 4Å: Chain A: A.84, P.85, S.86, R.129, D.174, V.187 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.86, A:R.129, A:R.129, A:D.174 EDO.6: 6 residues within 4Å: Chain A: D.326, D.327, D.328, W.329, A.330, H.379 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.327, A:D.328, A:W.329 Water bridges: A:D.328 EDO.7: 5 residues within 4Å: Chain A: P.354, S.355, P.365, S.366, G.367 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.355, A:G.367 Water bridges: A:P.365, A:G.367 EDO.8: 7 residues within 4Å: Chain A: I.98, A.101, E.102, R.103, P.225, L.226 Ligands: EDO.9 No protein-ligand interaction detected (PLIP) EDO.9: 5 residues within 4Å: Chain A: A.101, E.102, R.103, A.400 Ligands: EDO.8 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.103, A:R.103

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.10: 8 residues within 4Å: Chain A: P.8, D.9, V.12, G.13, A.14, D.15, G.16, R.29 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.9, A:R.29 Water bridges: A:R.29

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.11: 4 residues within 4Å: Chain A: R.49, E.51, G.52, R.80 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:G.52 Water bridges: A:R.49, A:M.53, A:M.53, A:R.80, A:R.80, A:R.80 Salt bridges: A:R.80

1 x MG: MAGNESIUM ION(Non-covalent)

MG.12: 5 residues within 4Å: Chain A: C.264, H.274, E.276, T.277, D.331 6 PLIP interactions: 2 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:H.274, A:E.276, H2O.5, H2O.5, H2O.11, H2O.12

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Arnling Baath, J. et al., Biochemical and structural features of diverse bacterial glucuronoyl esterases facilitating recalcitrant biomass conversion. Biotechnol Biofuels (2018)

Release Date

2018-08-22

Peptides

Putative acetyl xylan esterase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative acetyl xylan esterase

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