- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-trimer
- Ligands
- 6 x CU: COPPER (II) ION(Non-covalent)
- 3 x NO2: NITRITE ION(Non-covalent)
NO2.3: 8 residues within 4Å:- Chain A: D.136, H.138, H.173
- Chain C: H.293, I.295, H.344, L.346
- Ligands: CU.2
1 PLIP interactions:1 interactions with chain A- Water bridges: A:D.136
NO2.9: 8 residues within 4Å:- Chain A: H.293, I.295, H.344, L.346
- Chain B: D.136, H.138, H.173
- Ligands: CU.8
1 PLIP interactions:1 interactions with chain B- Water bridges: B:D.136
NO2.15: 8 residues within 4Å:- Chain B: H.293, I.295, H.344, L.346
- Chain C: D.136, H.138, H.173
- Ligands: CU.14
1 PLIP interactions:1 interactions with chain C- Water bridges: C:D.136
- 9 x MLI: MALONATE ION(Non-functional Binders)
MLI.4: 5 residues within 4Å:- Chain A: G.263, T.266, F.350, A.355, H.357
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:A.355
- Water bridges: A:R.92, A:R.92, A:R.92, A:G.263, A:H.357
- Salt bridges: A:H.357, A:H.357
MLI.5: 9 residues within 4Å:- Chain A: R.288, R.291, N.345, E.348
- Chain B: R.288, D.289, R.291
- Ligands: MLI.11, MLI.17
18 PLIP interactions:3 interactions with chain C, 6 interactions with chain A, 9 interactions with chain B- Water bridges: C:D.289, C:D.289, C:D.289, A:R.288, A:E.348, B:R.288, B:R.288, B:D.289, B:D.289, B:D.289
- Hydrogen bonds: A:N.345, B:D.289, B:R.291
- Salt bridges: A:R.288, A:R.291, A:R.291, B:R.288, B:R.288
MLI.6: 5 residues within 4Å:- Chain A: T.266, G.267, A.270, V.338, H.357
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:V.338
- Hydrogen bonds: A:G.267
- Water bridges: A:H.357
- Salt bridges: A:H.357, A:H.357
MLI.10: 5 residues within 4Å:- Chain B: G.263, T.266, F.350, A.355, H.357
9 PLIP interactions:9 interactions with chain B- Hydrophobic interactions: B:A.355
- Water bridges: B:R.92, B:R.92, B:R.92, B:G.263, B:T.266, B:H.357
- Salt bridges: B:H.357, B:H.357
MLI.11: 9 residues within 4Å:- Chain B: R.288, R.291, N.345, E.348
- Chain C: R.288, D.289, R.291
- Ligands: MLI.5, MLI.17
18 PLIP interactions:7 interactions with chain C, 6 interactions with chain A, 5 interactions with chain B- Hydrogen bonds: C:D.289, C:R.291, B:N.345
- Water bridges: C:R.288, C:R.288, C:R.288, A:D.289, A:D.289, A:D.289, A:D.289, A:D.289, A:D.289, B:R.288
- Salt bridges: C:R.288, C:R.288, B:R.288, B:R.291, B:R.291
MLI.12: 5 residues within 4Å:- Chain B: T.266, G.267, A.270, V.338, H.357
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:V.338
- Hydrogen bonds: B:G.267
- Water bridges: B:H.357, B:H.357
- Salt bridges: B:H.357, B:H.357
MLI.16: 5 residues within 4Å:- Chain C: G.263, T.266, F.350, A.355, H.357
9 PLIP interactions:9 interactions with chain C- Hydrophobic interactions: C:A.355
- Water bridges: C:R.92, C:R.92, C:R.92, C:G.263, C:T.266, C:H.357
- Salt bridges: C:H.357, C:H.357
MLI.17: 9 residues within 4Å:- Chain A: R.288, D.289, R.291
- Chain C: R.288, R.291, N.345, E.348
- Ligands: MLI.5, MLI.11
19 PLIP interactions:11 interactions with chain A, 3 interactions with chain B, 5 interactions with chain C- Hydrogen bonds: A:D.289, A:D.289, A:R.291, C:N.345
- Water bridges: A:R.288, A:R.288, A:R.288, A:D.289, A:D.289, A:D.289, B:D.289, B:D.289, B:D.289, C:R.288
- Salt bridges: A:R.288, A:R.288, C:R.288, C:R.291, C:R.291
MLI.18: 5 residues within 4Å:- Chain C: T.266, G.267, A.270, V.338, H.357
5 PLIP interactions:5 interactions with chain C- Hydrophobic interactions: C:V.338
- Hydrogen bonds: C:G.267
- Water bridges: C:H.357
- Salt bridges: C:H.357, C:H.357
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Halsted, T.P. et al., Catalytically important damage-free structures of a copper nitrite reductase obtained by femtosecond X-ray laser and room-temperature neutron crystallography. Iucrj (2019)
- Release Date
- 2019-07-03
- Peptides
- Copper-containing nitrite reductase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-trimer
- Ligands
- 6 x CU: COPPER (II) ION(Non-covalent)
- 3 x NO2: NITRITE ION(Non-covalent)
- 9 x MLI: MALONATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Halsted, T.P. et al., Catalytically important damage-free structures of a copper nitrite reductase obtained by femtosecond X-ray laser and room-temperature neutron crystallography. Iucrj (2019)
- Release Date
- 2019-07-03
- Peptides
- Copper-containing nitrite reductase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A