SMTL ID : 6gwy.1

Blood group synthase AAGlyB in its apo form cryoprotected with glycerol

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

homo-dimer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: H.177, F.180, T.189, Y.208, W.244, E.247 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.189, A:E.247 Water bridges: A:H.177 GOL.2: 8 residues within 4Å: Chain A: A.2, N.57, T.59, R.90, S.146, E.147, V.148, D.149 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.2, A:T.59, A:R.90, A:R.90, A:S.146 GOL.3: 4 residues within 4Å: Chain A: N.50, E.51, R.54, G.88 2 PLIP interactions: 2 interactions with chain A Water bridges: A:N.50, A:N.50 GOL.5: 6 residues within 4Å: Chain B: H.177, F.180, T.189, Y.208, W.244, E.247 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.189, B:T.189, B:E.247 Water bridges: B:H.177 GOL.6: 8 residues within 4Å: Chain B: A.2, N.57, T.59, R.90, S.146, E.147, V.148, D.149 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:A.2, B:R.90, B:R.90, B:S.146 GOL.7: 4 residues within 4Å: Chain B: N.50, E.51, R.54, G.88 2 PLIP interactions: 2 interactions with chain B Water bridges: B:N.50, B:N.50

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 2 residues within 4Å: Chain A: T.110, G.111 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.110, A:G.111 SO4.8: 2 residues within 4Å: Chain B: T.110, G.111 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.110, B:T.110, B:G.111

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rocha, J. et al., Blood group synthase AAGlyB in its apo form cryoprotected with glycerol. To be published

Release Date

2019-07-10

Peptides

ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase transferase B, alpha 1-3-galactosyltransferase): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase transferase B, alpha 1-3-galactosyltransferase)

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