SMTL ID : 6gwz.1

Blood group synthase AAGlyB in its apo form cryoprotected with PEG 3350

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-dimer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 8 residues within 4Å: Chain A: R.12, M.13, Y.15 Chain B: R.185, E.204, G.205, D.206, L.255 8 PLIP interactions: 6 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:R.185, B:E.204, B:G.205, B:G.205, A:M.13 Water bridges: B:R.256, B:K.258, A:P.11 EDO.2: 1 residues within 4Å: Chain A: H.163 4 PLIP interactions: 4 interactions with chain A Water bridges: A:D.162, A:H.163, A:H.163, A:H.163 EDO.5: 8 residues within 4Å: Chain A: R.185, E.204, G.205, D.206, L.255 Chain B: R.12, M.13, Y.15 7 PLIP interactions: 5 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:R.185, A:G.205, A:G.205, B:M.13 Water bridges: A:R.256, A:K.258, B:P.11 EDO.6: 1 residues within 4Å: Chain B: H.163 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:H.163 Water bridges: B:D.162, B:H.163

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 2 residues within 4Å: Chain A: T.110, G.111 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.110, A:G.111 SO4.4: 2 residues within 4Å: Chain A: K.252, R.256 8 PLIP interactions: 8 interactions with chain A Water bridges: A:Y.199, A:K.252, A:K.252, A:R.256, A:R.256, A:R.256 Salt bridges: A:K.252, A:R.256 SO4.7: 2 residues within 4Å: Chain B: T.110, G.111 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.110, B:T.110, B:G.111 SO4.8: 2 residues within 4Å: Chain B: K.252, R.256 8 PLIP interactions: 8 interactions with chain B Water bridges: B:Y.199, B:K.252, B:K.252, B:R.256, B:R.256, B:R.256 Salt bridges: B:K.252, B:R.256

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rocha, J. et al., Blood group synthase AAGlyB in its apo form cryoprotected with PEG 3350. To be published

Release Date

2019-07-10

Peptides

ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase transferase B, alpha 1-3-galactosyltransferase): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase transferase B, alpha 1-3-galactosyltransferase)

Related Entries With Identical Sequence