SMTL ID : 6gzt.1

Structure of Chlamydia trachomatis effector protein ChlaDUB1 bound to Coenzyme A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 9 residues within 4Å: Chain A: D.39, W.119, S.142, V.143, S.146, W.148, C.217 Ligands: GOL.4, COA.6 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.142, A:W.148 GOL.2: 10 residues within 4Å: Chain A: L.47, L.60, E.61, T.62, P.65, A.66, K.74, P.115, V.116, F.117 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.66, A:K.74, A:K.74, A:P.115, A:F.117 GOL.3: 7 residues within 4Å: Chain A: R.159, K.202, F.224, Y.228, P.232, L.233, T.234 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.159, A:L.233 GOL.4: 6 residues within 4Å: Chain A: A.37, D.39, A.138, G.141, S.142 Ligands: GOL.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.137 Water bridges: A:A.37

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 3 residues within 4Å: Chain A: T.126, L.127, S.128 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.127, A:S.128, A:S.128

1 x COA: COENZYME A(Non-covalent)

COA.6: 20 residues within 4Å: Chain A: H.121, T.123, T.133, Q.136, L.137, K.140, V.143, G.144, A.145, S.146, H.147, L.166, Y.169, Q.210, S.213, G.214, S.215, S.216, C.217 Ligands: GOL.1 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.123, A:A.145, A:S.146, A:H.147 Water bridges: A:T.133 Salt bridges: A:H.121, A:K.140

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pruneda, J.N. et al., A Chlamydia effector combining deubiquitination and acetylation activities induces Golgi fragmentation. Nat Microbiol (2018)

Release Date

2018-11-14

Peptides

Deubiquitinase and deneddylase Dub1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Deubiquitinase and deneddylase Dub1

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