SMTL ID : 6gzs.1

Structure of Chlamydia trachomatis effector protein ChlaDUB1 bound to ubiquitin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 2 residues within 4Å: Chain A: T.52, L.53 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.52

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: Y.49, H.226, F.254, A.257, C.258 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.49, A:Y.49 Water bridges: A:A.261 Salt bridges: A:H.226

1 x AYE: prop-2-en-1-amine(Covalent)

AYE.3: 7 residues within 4Å: Chain A: V.143, S.146, H.147, Q.210, S.215, C.217 Chain B: G.75 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.146 Water bridges: A:G.218

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pruneda, J.N. et al., A Chlamydia effector combining deubiquitination and acetylation activities induces Golgi fragmentation. Nat Microbiol (2018)

Release Date

2018-11-14

Peptides

Deubiquitinase and deneddylase Dub1: A
Polyubiquitin-B: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Deubiquitinase and deneddylase Dub1

Polyubiquitin-B

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