SMTL ID : 6h0b.1 (1 other biounit)

Crystal structure of the human GalNAc-T4 in complex with UDP, manganese and the diglycopeptide 6.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

18 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: A.142, F.143, Y.144, D.175, R.204, G.206, L.207 Ligand excluded by PLIP EDO.2: 4 residues within 4Å: Chain A: G.245, R.246, D.247, E.248 Ligand excluded by PLIP EDO.3: 1 residues within 4Å: Chain A: I.270 Ligand excluded by PLIP EDO.4: 4 residues within 4Å: Chain A: R.296, R.297, I.298, D.302 Ligand excluded by PLIP EDO.5: 3 residues within 4Å: Chain A: W.77, K.79, E.117 Ligand excluded by PLIP EDO.6: 5 residues within 4Å: Chain A: R.120, C.124, K.125, F.129, G.235 Ligand excluded by PLIP EDO.7: 5 residues within 4Å: Chain A: P.135, D.221, I.244, S.317, K.319 Ligand excluded by PLIP EDO.8: 2 residues within 4Å: Chain A: R.305 Ligands: EDO.18 Ligand excluded by PLIP EDO.9: 3 residues within 4Å: Chain A: D.260, W.261, N.262 Ligand excluded by PLIP EDO.10: 2 residues within 4Å: Chain A: H.287, N.434 Ligand excluded by PLIP EDO.11: 3 residues within 4Å: Chain A: L.212, I.213, T.216 Ligand excluded by PLIP EDO.12: 7 residues within 4Å: Chain A: A.215, T.216, L.223, K.318, F.321, Q.322, T.326 Ligand excluded by PLIP EDO.13: 4 residues within 4Å: Chain A: G.311, G.312, L.313, H.362 Ligand excluded by PLIP EDO.14: 4 residues within 4Å: Chain A: I.199, R.200, T.201, F.217 Ligand excluded by PLIP EDO.15: 4 residues within 4Å: Chain A: A.164, V.165, K.168, R.195 Ligand excluded by PLIP EDO.16: 4 residues within 4Å: Chain A: I.256, Q.269, M.274, W.286 Ligand excluded by PLIP EDO.17: 6 residues within 4Å: Chain A: Q.347, C.348, G.349, L.419, R.420, K.422 Ligand excluded by PLIP EDO.18: 4 residues within 4Å: Chain A: R.305, W.426, N.430 Ligands: EDO.8 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

de Las Rivas, M. et al., Structural and Mechanistic Insights into the Catalytic-Domain-Mediated Short-Range Glycosylation Preferences of GalNAc-T4. ACS Cent Sci (2018)

Release Date

2018-10-10

Peptides

Polypeptide N-acetylgalactosaminyltransferase 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Polypeptide N-acetylgalactosaminyltransferase 4

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