- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 1 x MN: MANGANESE (II) ION(Non-covalent)
- 1 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)
- 18 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.3: 9 residues within 4Å:- Chain A: D.227, A.310, G.311, G.312, L.313, H.362, F.364
- Chain B: T.12
- Ligands: UDP.2
Ligand excluded by PLIPEDO.4: 3 residues within 4Å:- Chain A: W.77, K.79, E.117
Ligand excluded by PLIPEDO.5: 2 residues within 4Å:- Chain A: R.197, L.198
Ligand excluded by PLIPEDO.6: 8 residues within 4Å:- Chain A: P.67, P.68, A.69, E.76, S.111, H.113, R.114, H.115
Ligand excluded by PLIPEDO.7: 3 residues within 4Å:- Chain A: E.94, I.97, E.98
Ligand excluded by PLIPEDO.8: 5 residues within 4Å:- Chain A: T.136, A.164, V.165, K.168, R.195
Ligand excluded by PLIPEDO.9: 2 residues within 4Å:- Chain A: Y.189, N.192
Ligand excluded by PLIPEDO.10: 5 residues within 4Å:- Chain A: H.287, S.288, P.290, N.434
- Ligands: EDO.16
Ligand excluded by PLIPEDO.11: 3 residues within 4Å:- Chain A: G.325, E.411, R.412
Ligand excluded by PLIPEDO.12: 7 residues within 4Å:- Chain A: A.215, T.216, L.223, K.318, F.321, Q.322, T.326
Ligand excluded by PLIPEDO.13: 3 residues within 4Å:- Chain A: R.305, W.426, N.430
Ligand excluded by PLIPEDO.14: 2 residues within 4Å:- Chain A: D.260, W.261
Ligand excluded by PLIPEDO.15: 3 residues within 4Å:- Chain A: Y.267, M.268, Q.269
Ligand excluded by PLIPEDO.16: 5 residues within 4Å:- Chain A: H.287, F.432, N.434, L.435
- Ligands: EDO.10
Ligand excluded by PLIPEDO.17: 1 residues within 4Å:- Chain A: R.296
Ligand excluded by PLIPEDO.18: 2 residues within 4Å:- Chain A: E.265, Y.267
Ligand excluded by PLIPEDO.19: 2 residues within 4Å:- Chain A: D.108, W.148
Ligand excluded by PLIPEDO.20: 6 residues within 4Å:- Chain A: H.436, E.439, T.489, N.491, E.493, R.495
Ligand excluded by PLIP- 1 x GOL: GLYCEROL(Non-functional Binders)
- 2 x NGA: 2-acetamido-2-deoxy-beta-D-galactopyranose(Post Translational Modification)
NGA.22: 8 residues within 4Å:- Chain A: R.281, T.283, Q.285, K.366, R.367
- Chain B: T.11, T.12, P.13
7 PLIP interactions:2 interactions with chain B, 5 interactions with chain A- Hydrogen bonds: B:T.11, A:Q.285, A:K.366
- Water bridges: B:T.11, A:R.281, A:R.281
- Hydrophobic interactions: A:T.283
NGA.23: 11 residues within 4Å:- Chain A: D.459, N.461, F.475, H.478, Q.480, G.482, N.483, Q.484
- Chain B: A.2, T.3, G.4
7 PLIP interactions:6 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:Q.480
- Hydrogen bonds: A:D.459, A:H.478, A:N.483, A:N.483, A:Q.484, B:A.2
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- de Las Rivas, M. et al., Structural and Mechanistic Insights into the Catalytic-Domain-Mediated Short-Range Glycosylation Preferences of GalNAc-T4. ACS Cent Sci (2018)
- Release Date
- 2018-10-10
- Peptides
- Polypeptide N-acetylgalactosaminyltransferase 4: A
ALA-THR-GLY-ALA-GLY-ALA-GLY-ALA-GLY-THR-THR-PRO-GLY-PRO-GLY: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 1 x MN: MANGANESE (II) ION(Non-covalent)
- 1 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)
- 18 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 1 x GOL: GLYCEROL(Non-functional Binders)
- 2 x NGA: 2-acetamido-2-deoxy-beta-D-galactopyranose(Post Translational Modification)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- de Las Rivas, M. et al., Structural and Mechanistic Insights into the Catalytic-Domain-Mediated Short-Range Glycosylation Preferences of GalNAc-T4. ACS Cent Sci (2018)
- Release Date
- 2018-10-10
- Peptides
- Polypeptide N-acetylgalactosaminyltransferase 4: A
ALA-THR-GLY-ALA-GLY-ALA-GLY-ALA-GLY-THR-THR-PRO-GLY-PRO-GLY: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
F