SMTL ID : 6h22.2 (1 other biounit)

Crystal structure of Mdm2 bound to a stapled peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.01 Å

Oligo State

hetero-1-1-mer

Ligands

1 x FL5: 12-(dimethylamino)-3,10-diethyl-N,N,N-trimethyl-3,10-dihydrodibenzo[3,4:7,8]cycloocta[1,2-d:5,6-d']bis([1,2,3]triazole)-5-aminium(Covalent)

FL5.1: 7 residues within 4Å: Chain A: F.44, Q.48, M.51 Chain B: A.5, E.6, A.9, A.12 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:F.44, A:Q.48, B:A.5, B:A.12 pi-Stacking: A:F.44

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sharma, K. et al., Water-soluble, stable and azide-reactive strained dialkynes for biocompatible double strain-promoted click chemistry. Org.Biomol.Chem. (2019)

Release Date

2019-07-31

Peptides

E3 ubiquitin-protein ligase Mdm2: A
Stapled peptide: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

E3 ubiquitin-protein ligase Mdm2

Stapled peptide

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